LINCS Program

Join us on Thur. July 24 @ 2 PM ET for a virtual seminar about ChEA-KG, a newly developed @MaayanLab web-based app that enables users to analyze their gene sets in context of a human gene regulatory network (1559 transcription factors). Please register at maayanlab.cloud/turl/35e9d6a0

Join us on Thursday, February 27 at 2:00 PM ET for a virtual seminar featuring ARCHS4, a web resource that streamlines access to over two million uniformly aligned RNA-seq samples from GEO. Please register in advance: maayanlab.cloud/turl/a60f13d9

Join us on Thursday, January 23 at 2:00 PM ET for a virtual seminar featuring GeneSetCart, a web application for multi-omics AI-driven gene set analysis. Please register in advance for this virtual seminar: maayanlab.cloud/turl/6660bf4c

The @CfdeWorkbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. @NIH_CommonFund @CFDEKC

The Summer Research Training Program in Biomedical Big #DataScience in the @MaayanLab @IcahnMountSinai is accepting applications for summer session 2025! Application deadline is Feb 1. Program details: labs.icahn.mssm.edu/maayanlab/summ…

Join our Virtual Symposium in Big #DataScience on 8/8 @ 10 AM ET where the @Maayanlab trainees in the 2024 Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register: mountsinai.zoom.us/webinar/regist…

Join us on Tuesday, June 25th at 1:00 PM ET for a virtual workshop introducing the Playbook Workflow Builder: playbook-workflow-builder.cloud, a new #bioinformatics platform to interactively create #workflows with no coding skills. Registration: mssm.zoom.us/webinar/regist… #genomics #omics

On Friday 5/31 @ 1 PM ET, members of the @CfdeWorkbench will introduce new tools to query the @LINCSProgram L1000 data and gene expression signatures automatically extracted from @NCBI #GEO rummageo.com register: cfde.info

Rummagene is a search engine for gene sets, created by extracting human and mouse gene sets from supporting materials of >120,000 biomedical research publications: nature.com/articles/s4200… @AviMaayan @MaayanLab

RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO biorxiv.org/content/10.110…

Don't forget to tune in on 4/26 at 1PM ET to learn about the #NIH_CFDE program, the #Metabolomics Workbench (@MetabolomicsWB), & get the inside scoop on the Knowledge Center Portal. #DataEcosystem bit.ly/3vX6iJK

The new #NIH_CFDE Data Resource Center will create a portal to catalyze user-friendly queries of Common Fund data sets and connect users to Common Fund resources to enable new discoveries only possible by searching across Common Fund data. go.nih.gov/GNIq7yC

The Common Fund has rich datasets across many fields of biomedical and behavioral research, and the new #NIH_CFDE Knowledge Center will establish a knowledge network platform to enable scientists to answer questions using Common Fund data. go.nih.gov/GNIq7yC

Summer Research Training Program in Biomedical Big #DataScience in the @MaayanLab @IcahnMountSinai ACCEPTING APPLICATIONS FOR SUMMER SESSION 2024 | Application deadline Feb 1 labs.icahn.mssm.edu/maayanlab/summ…

Join the @MaayanLab Virtual Symposium 8/10 @ 10 AM ET where our trainees in the Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register: mssm.zoom.us/webinar/regist… #STEM #Bioinformatics #SystemsBiology #DataMining

💡 NEW RESEARCH @CommsMedicine - Evangelista et al. construct ReproTox-KG, a #toxicology knowledge graph for exploring the link between drugs, genes & structural birth defects | @MaayanLab @AviMaayan @CfdeNih nature.com/articles/s4385…

Data scientists at @IcahnMountSinai and colleagues have created an #ArtificialIntelligence model that may more accurately predict which existing #medicines, not currently classified as harmful, may, in fact, lead to congenital disabilities: mshs.co/3rxxJr0

Last month we welcomed the 2023 cohort of 12 talented undergraduates into our lab for 10-weeks as part of our Summer Research Training Program in Biomedical Big #DataScience labs.icahn.mssm.edu/maayanlab/summ…

Amadori et al. show that plasma from patients with #atherosclerosis triggers unique inflammatory signaling in PBMNCs, which were used for selecting #drugs that may be repurposed for cardiovascular #immunotherapies|@ChiaraGiannare1 @djama85 @NYULHCVRC nature.com/articles/s4416…

With this feature, that the @MaayanLab just added to #Enrichr #metadata" target="_blank" rel="nofollow noopener">maayanlab.cloud/Enrichr/#metad…, you can now search for any term, and then download selected gene sets that contain to the search term in their annotation string. #Bioinformatics #Omics #DataMining #BiomedicalResearch #BigData