Jonathan Barnoud

MDAnalysis will participate in #GSOC 2023! If you have some experience with #MD or other simulations at the molecular scale and if you like #coding to solve problems in #physics #chemistry #compchem #biochemistry #materialsscience is your thing: read mdanalysis.org/2023/02/22/gso…

Presenting MAD: the Martini Database Server. MAD is designed for the sharing of structures and topologies of molecules parametrized with Martini. MAD also provides a GUI to convert atomistic structures into CG structures and prepare complex systems. pubs.acs.org/doi/abs/10.102…

Martini model of an entire cell !!

L'authentification à 2 facteurs.

Testing the combination of #MolecularNodes and #blender3d's new simulation nodes in #geometrynodes. Able to get individual amino acids to point wiggle their way to try and get closer to a target, but still obeying their bonds and not breaking anything.

my pc was stuck in bios because defaults mean it can't read my boot disk... but bios wasnt coming up on my monitor and ipmi defaults arent sensible either..... why wasn't it coming up on my monitor?

Why would you say "jay-peg" when the p is short for "photographic"? Obviously it should be jpheg.

👩🏽‍💻Just published a brand new blog post on taming the wild west of data management - check out my 4 tips for organizing your dataset list! #DataOrganization #DataManagement 📊 at baaden.ibpc.fr/v2/blog/index_…

Reviewing a paper; the fact that I have to make an argument for why it is a stupid idea to provide code and simulation input files as a 300 page SI PDF, instead of putting them on GitHub or Zenodo, is making me sad and annoyed at the same time. #compchem #md #PeerReview

@Jarl_Ahneg @Freebox 😱

Je percute que maintenant mais j'aurais ptet dû m'inquiéter du "aucune date" au lieu d'un "aucune heure" pour le rétablissement non ? @Freebox

OPEN POSITIONS ON WHOLE-CELL MODELLING Interested in simulating entire cells and cell organelles ? Or rather keen on improving the Martini model and associated multi-scale tools ? Then join our team as PhD student or post-doc ! See cgmartini.nl on how to apply.

ChatGPT: Just pip install python!

Taking Care of Business (monkeyuser.com/2022/business-…)

Another year almost done! See the amazing work our #gsoc and @outreachy contributors did this year on our blog. mdanalysis.org/2022/12/15/gso…

Our Martini 3 small molecule paper (doi.org/10.1002/adts.2…) has been selected as part of the "Best of the Advanced journals 2022" collection. Congrats @ricalessandri, @jbarnoud, Anders, Ilias, Alex and @CG_Martini ! #CoarseGrained #Martini3 #SmallMolecules #MDsimulations

#phdlife #compchem When you check your morning mail and your supervisor wants you to do a #MD simulation of a whole cell ... in 10 days and your first thought is

I can now load _basically_ every atom from an entire bacterial cell, into #blender3d and #geometrynodes via #molecularnodes. Each macromolecule is down to atomic detail where available via CellPack, totalling ~250,000,000 points, all rendering (quite quickly) in Cycles #b3d

For all those who are worrying that ChatGPT will result in students using it to cheat on homework and exam, I wanted to point out that this slices both ways. 😉

@pierrepo L'éditeur de code et le terminal sont-ils des entités ?

@ttubiana If Monsieur Mangetout could eat a plane, surely with enough time to he could have eaten a train. No? en.m.wikipedia.org/wiki/Michel_Lo…

I wasn't sure.... But now I know..... #FirstDegreeAnswer 😂