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PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-length prediction mapping
doi.org/10.1093/bioinf…
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Bioinformaticx
58 posts
Bioinformaticx
@Bioinformaticx
Bioinformatics methods & tools #genomics #proteomics #metagenomics #assembly #virology #plant #biology #sequencing #DNA #eDNA #aDNA #genes #ML #AI #science #DB
Finland Beigetreten Nisan 2019
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FALCON2: compression-based metagenomic classification of ancient viruses
doi.org/10.1093/bioinf…
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An evaluation of computational methods for reconstruction of human viral DNA genomes
doi.org/10.1093/gigasc…
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Learning a generalized graph transformer for protein function prediction in dissimilar sequences
doi.org/10.1093/gigasc…
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Intra-host genomic diversity and integration landscape of human tissue-resident DNA virome
doi.org/10.1093/nar/gk…
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Fully resolved assembly of Cryptosporidium parvum
doi.org/10.1093/gigasc…
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A super-pangenome of the North American wild grape species
doi.org/10.1186/s13059…
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AlcoR: alignment-free simulation, mapping, and visualization of low-complexity regions in biological data
doi.org/10.1093/gigasc…
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Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data
doi.org/10.1101/gr.277…
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Efficient mapping of accurate long reads in minimizer space with mapquik
doi.org/10.1101/gr.277…
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Efficient short read mapping to a pangenome that
is represented by a graph of ED strings
doi.org/10.1093/bioinf…
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Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs
doi.org/10.1093/bioinf…
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mlf-core: a framework for deterministic machine learning
doi.org/10.1093/bioinf…
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DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data
doi.org/10.1093/bioinf…
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DeepOM: Single-molecule optical genome mapping via deep learning
doi.org/10.1093/bioinf…
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Unmasking the tissue-resident eukaryotic DNA virome in humans
doi.org/10.1093/nar/gk…
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Foldcomp: a library and format for compressing and indexing large protein structure sets
doi.org/10.1093/bioinf…
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Unmasking the tissue-resident eukaryotic DNA virome in humans
doi.org/10.1093/nar/gk…
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AGC: Compact representation of assembled genomes with fast queries and updates
doi.org/10.1093/bioinf…
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Great opportunity for learning, networking, and visiting Lisbon
olissipo.inesc-id.pt/modelling-anal…
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#SingleCell
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