Nature Methods

Read the News & Views highlighting this work here: nature.com/articles/s4159…

CellVoyager: an AI agent that explores new biological hypotheses by autonomously analyzing scRNA-seq datasets. @EggsAndSam7 @james_y_zou @chenbowen118 nature.com/articles/s4159…

Link to Method of the Year 2024: nature.com/articles/s4159…

In this month's Editorial, we highlight what's happened in the spatial proteomics field since we chose it as our Method of the Year 2024. nature.com/articles/s4159…

stVCR models and reconstructs single-cell dynamics of cell differentiation, proliferation and migration from time-series spatial transcriptome data. nature.com/articles/s4159…

And for a quick summary, read the Research Briefing here: nature.com/articles/s4159…

SeeDB-Live is a tissue-clearing approach for live tissue slices or brains, improving image quality while having minimal effects on electrophysiological properties of neurons. @TakeshiImaiLab @Shigenori774 nature.com/articles/s4159…

And read the News & Views highlighting the work, here: nature.com/articles/s4159…

ANNEVO uses a deep learning approach to advance accurate and scalable ab initio gene annotation of evolutionarily diverse genomes. nature.com/articles/s4159…

Connectome-seq uses RNA barcoding, synaptosome isolation, single-nucleus and single-synaptosome RNA sequencing to allow access to connectomic and transcriptomic information in high throughput. @Simenzhao @ZBXLAB @CDB_Illinois @MCB_Illinois @NeuroscienceP nature.com/articles/s4159…

Our March issue is live! 🎉 nature.com/nmeth/volumes/… On the cover, the Antscan database consists of detailed synchrotron microCT images of diverse ant species. Paper: nature.com/articles/s4159… Image: Thomas van de Kamp, Karlsruhe Institute of Technology

AF2BIND: a logistic regression model that predicts small-molecule binding site residues in proteins. nature.com/articles/s4159…

And read the Research Briefing highlighting this work, here: nature.com/articles/s4159…

Engineered RNA domains are effective scaffolds for structure determination of RNAs that are otherwise too small for cryo-EM. nature.com/articles/s4159…

Read our Editorial: Using AI responsibly in scientific publishing nature.com/articles/s4159…

Introducing Antscan, a public database of synchrotron X-ray CT images of 800 ant species. nature.com/articles/s4159…

Improved red and green indicators for norepinephrine detect norepinephrine release in awake behaving mice. @tpatriarchi nature.com/articles/s4159…

Also read the N&V highlighting the work here: nature.com/articles/s4159…

DECODE: a universal deconvolution framework for transcriptomic, proteomic and metabolomic data. nature.com/articles/s4159…

Conference alert!! Please join the Nature Conference on Nanobiotechnology for Precision Medicine and Tissue Engineering in Tel Aviv, May 26-28! natureconferences.streamgo.live/nanobiotechnol…