BridgeDb is @[email protected]

BridgeDb 3.0.23 was released, with improvements for the quality control tool: doi.org/10.5281/zenodo… Full release notes here: github.com/bridgedb/Bridg…

new paper: "The FAIR Cookbook - the essential resource for and by FAIR doers" doi.org/10.1038/s41597…

BridgeDb Java 3.0.20 is released, a minor update: github.com/bridgedb/Bridg…

RT @egonw@scholar.social Fwd: "BridgeDb NWO grant update #6: second hackathon" chem-bla-ics.blogspot.com/2023/02/bridge… bridgedb #hackathon #bridgeDbNWO @egonw/109845179251715711" target="_blank" rel="nofollow noopener">scholar.social/@egonw/1098451…

during the #bridgedbnwo hackathon today we release a new BridgeDb DataSources release, new BridgeDb Docker images, and a new BridgeDb Java release :)

today the 2nd NWO Open Science grant hackathon starts (until tomorrow lunchtime): github.com/bridgedb/nwo-h… #bridgedbnwo

today the 2nd NWO Open Science grant hackathon starts (until tomorrow lunchtime): github.com/bridgedb/nwo-h… (ping @egonw@akademienl.social if you want to participate)

Our webserver was down yesterday, for unclear reasons. Apologies for the inconvenience. We took the opportunity to load the latest Gene/Protein identifier mapping databases released earlier this month, see bridgedb.github.io/data/gene_data…

RT @egonw@scholar.social Blog: "BridgeDb NWO grant update #5: BioHackathon, Webservice, Bioregistry " chem-bla-ics.blogspot.com/2022/12/bridge… @egonw/109493934453308502" target="_blank" rel="nofollow noopener">scholar.social/@egonw/1094939…

BridgeDb 3.0.18 is released, with updates the versions of several dependencies, including Apache Derby 10.15.2.0, handling ChEBI identifiers with Bioregistry better, and a much cleaner BridgeDb QC tool github.com/bridgedb/Bridg…

RT @egonw@akademienl.social I just added the first article (partly) funded with our NWO ISAAC browser plugin, one with 19 authors, in about 2 minutes. The browser plugin is a real time saver! chrome.google.com/webstore/detai… Just give it a DOI and off it goes. @egonw/109459734026094294" target="_blank" rel="nofollow noopener">akademienl.social/@egonw/1094597…

reflecting the hard part is done. We see here the new JSON response to an API call! @egonw/109349674255256007" target="_blank" rel="nofollow noopener">scholar.social/@egonw/1093496… (2/2)

RT @egonw@scholar.social it's been a bit silent on the bridgedb NWO Open Science grant front. Holiday, and a lot of teaching in Sept/Oct. But our team continued working on upgrading the BridgeDb Webservice code. Today I saw some really nice new results, basically (1/2)

:) @egonw/109338085324111356" target="_blank" rel="nofollow noopener">scholar.social/@egonw/1093380… (2/2)

RT @egonw@scholar.social we are getting better at tracking outdated identifiers. I just added a bunch of no-longer existing #wikidata identifiers to bridgedb Tiwid, huge thanks to Tooba and Denise (and cthoyt for setting up the GitHub Action to make the plot automatically (1/2)

BridgeDb is cited. Check this paper what their story is about identifier mapping

We've been journalclubbed: "BridgeDB & Wikidata. Una poderosa combinación que genera investigación abierta interoperable" youtube.com/watch?v=cgQ6Li…

Did you miss the @NWONieuws #OpenScience in Practice webinar on interoperable #openresearch with @egonwillighagen, @jambelien and Sander de Ridder? The recording is now available: nwo.nl/en/open-scienc…

it looks like we have DNS problems with our website. Likely solve tomorrow. Ping @egonwillighagen if you need specific info from the website, and he'll try to help

we received some reports that suggested that the BridgeDb Webservice was slow in responding. We just rebooted the service. Plz let us know if you continue to experience issues.