SpikeInterface (@spikeinterface) - Twitterプロフィール

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SpikeInterface@spikeinterface·20 Tem

📢📢📢 #neurotwitter #ephys #spikesorting SpikeInterface version 0.101.0 is released! You can update your current version with: >>> pip install -U spikeinterface It comes with many many bug fixes and new features. Check out the full release notes here: spikeinterface.readthedocs.io/en/latest/rele…

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SpikeInterface@spikeinterface·20 Tem

@WeissShahaf Not yet, but implementing it is on our Todo list. For now it's removing, merging, and labeling. The other important new feature is that merging units will not require to recompute any extension, because they get "smartly" merged. The plan is to do the same for splitting!

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The Ephys Whisperer - Shahaf Weiss@WeissShahaf·20 Tem

@spikeinterface By full, u mean splitting is an option?

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SpikeInterface@spikeinterface·20 Tem

📢📢📢 #neurotwitter #ephys #spikesorting SpikeInterface version 0.101.0 is released! You can update your current version with: >>> pip install -U spikeinterface It comes with many many bug fixes and new features. Check out the full release notes here: spikeinterface.readthedocs.io/en/latest/rele…

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SpikeInterface@spikeinterface·20 Tem

A new release of the SpikeInterface-GUI is also available, now supporting full manual curation! Check it out as a potential alternative of Phy! github.com/SpikeInterface…

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SpikeInterface@spikeinterface·20 Tem

The most important new feature is the SortingAnalyzer, a new object for postprocessing spike sorting results. Refer to this guide to update your pipeline from previous versions: #updating-from-legacy" target="_blank" rel="nofollow noopener">spikeinterface.readthedocs.io/en/latest/tuto…

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Adrian Duszkiewicz@AdrianDu_·30 May

Had a fantastic time at the @spikeinterface workshop hosted by @InfAtEd earlier this week! Tons of useful info about state-of-the-art methods in the arcane art of spike sorting ⚡️ Here's @buccino_alessio from @AllenInstitute hammering home the most sobering point of the week...

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SpikeInterface@spikeinterface·11 Mar

You can upgrade to the new version with: >>> pip install -U spikeinterface And run Kilosort4 "as usual":

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SpikeInterface@spikeinterface·11 Mar

#neurotwitter #ephystwitter #spikesorting 📢📢📢 SpikeInterface v0.100.1 has just been released on #PyPi pypi.org/project/spikei… A few bug fixes and support for Kilosort4, also via docker! Release notes here: spikeinterface.readthedocs.io/en/0.100.1/rel… Happy spike sorting!

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SpikeInterface@spikeinterface·22 Şub

📢📢📢 #ephys and #spikesorting community! We are thrilled to announce the "Tools and Methods for Next Generation Electrophysiology" event, happening in Edinburgh from May 27-31. Registration link: forms.gle/6dEdeR7sD7u6u8… More info on the event: shorturl.at/oqU48

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Cambridge NeuroTech@CambNeuroTech·6 Kas

Happening tomorrow - don't miss out... 🧠⬇️

Cambridge NeuroTech@CambNeuroTech

Join us and @buccino_alessio @spikeinterface @AllenInstitute on Nov 7th if you want learn about spike sorting from the experts with a follow-along tutorial covering best-practices for using the expansive SpikeInterface framework. Grab your spot here: eu1.hubs.ly/H0613yy0

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SpikeInterface@spikeinterface·3 Kas

#neurotwitter #ephystwitter #spikesorting 📢📢📢📢📢 SpikeInterface v0.99.0 has been released on #PyPi! pypi.org/project/spikei… Just run this to upgrade your installation: >>> pip install --upgrade spikeinterface Check out the release notes here: spikeinterface.readthedocs.io/en/0.99.0/rele…

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Cambridge NeuroTech@CambNeuroTech·1 Kas

Join us and @buccino_alessio @spikeinterface @AllenInstitute on Nov 7th if you want learn about spike sorting from the experts with a follow-along tutorial covering best-practices for using the expansive SpikeInterface framework. Grab your spot here: eu1.hubs.ly/H0613yy0

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Alessio Buccino@buccino_alessio·15 Eki

It's been a great pleasure to present @spikeinterface and recent updates in #ephys analysis at #ODIN23 at @mitbrainandcog! Lots of amazing neurotech and tools for data processing, modeling, and sharing to bring neuroscience to the next level! Thanks @neurovium for the invitation!

Nima Dehghani@neurovium

Alessio Buccino (Allen Institute for Neural Dynamics) SpikeInterface & SpikeForest: Spike sorting in large-scale recordings @buccino_alessio #ODIN2023 @mcgovernmit @mitbrainandcog

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Alessio Buccino@buccino_alessio·1 Eyl

Now accepted in @IOPPublishing Journal of #Neural #Engineering ! Check out the accepted version here: iopscience.iop.org/article/10.108…

Alessio Buccino@buccino_alessio

Do you use #neuropixels or #highdensity probes? Are your recordings filling up your hard drives? We got you covered! In the first preprint from @AllenInstitute for Neural Dynamics, we looked at ways to reduce the footprint of #ephys data. biorxiv.org/content/10.110… (1/n)

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PythoNeuro@pythoneuro·14 Ağu

@spikeinterface is a #Python module that enables you to preprocess extracellular recordings, run and compare *several* spike sorters, and visualize the results. Also have awesome documentation! #OpenScience #neuroscience @MatthiasHennig6 @buccino_alessio @cole_hurwitz

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Nick Steinmetz@SteinmetzNeuro·11 Ağu

Neuropixels 2.0 probes are now on sale! Multi-shank, miniaturized, higher density than 1.0. To order: neuropixels.org/post/neuropixe… Our paper about the probes: science.org/doi/full/10.11…

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SpikeInterface@spikeinterface·9 Tem

A very exciting new feature is the motion correction framework to compensate for drifts! Check out this tutorial for more info: spikeinterface.readthedocs.io/en/latest/how_…

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SpikeInterface@spikeinterface·9 Tem

This release includes several bug fixes and new features! Check out the main changes here: spikeinterface.readthedocs.io/en/latest/rele…

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SpikeInterface@spikeinterface·9 Tem

#neurotwitter #ephystwitter #spikesorting SpikeInterface v0.98.0 has been released on #PyPi: pypi.org/project/spikei… Just run: >>> pip install --upgrade spikeinterface

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Alessio Buccino@buccino_alessio·3 Tem

With the use of #Neuropixels probes (or similar) for 𝑖𝑛 𝑣𝑖𝑣𝑜 recordings, it is very common to observe probe "drifts", which strongly degrade spike sorting accuracy. In our recent paper, we looked at several drift correction methods and evaluated their performance! (1/10)

bioRxiv Neuroscience@biorxiv_neursci

A modular approach to handle in-vivo drift correction for high-density extracellular recordings biorxiv.org/cgi/content/sh… #biorxiv_neursci

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Alessio Buccino@buccino_alessio·5 Haz

Do you use #neuropixels or #highdensity probes? Are your recordings filling up your hard drives? We got you covered! In the first preprint from @AllenInstitute for Neural Dynamics, we looked at ways to reduce the footprint of #ephys data. biorxiv.org/content/10.110… (1/n)

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