BioCyc&Pathway Tools

BioCyc version 28.5 released! For more info, please visit: biocyc.org/release-notes.…

EcoCyc.org has implemented a new categorization schema that indicates the degree to which a gene has been characterized. You can find the paper in Nucleic Acids Research at academic.oup.com/nar/advance-ar….

BioCyc version 28.1 released! For more info, please visit: biocyc.org/release-notes.…

Read about BioCyc’s new fast and user-friendly Genome Explorer here: sri.com/press/story/sr…

Our paper "An evaluation of ChatGPT and Bard (Gemini) in the context of biological knowledge retrieval" has just been published in Microbiology Society. doi.org/10.1099/acmi.0…

Our Mycobacterium tuberculosis H37Rv database received significant manual curation recently. We added over 1000 small RNAs and information from high-throughput datasets covering transcriptional regulation, transcription start sites, and gene essentiality data.

BsubCyc (Bacillus subtilis 168 database) received significant manual curation recently, including several new pathways, all riboswitches, and some high throughput data for transcriptional regulation and terminator locations. Many new summaries for genes and proteins were added

BioCyc just released new updates to the genome database of model cyanobacterium, Synechocystis PCC 6803, which include new reactions and pathways, small RNAs, locations of transcription start sites, and links to external resources for genes that are part of mutant libraries.

BioCyc version 28.0 released! For more info, please visit: biocyc.org/release-notes.…

2nd CyanoCyc Online Mini-Symposium! Register at tinyurl.com/ycxvwk76 @CyanoWorld1

Our paper about CyanoCyc and the community curation review project of Synechocystis sp. PCC 6803 substrain Kazusa has just been published in Frontiers in Microbiology: frontiersin.org/journals/micro…

New BioCyc Genome Browser Tutorial Feb 2, 2024 12:00 PM Pacific Click here to register: sri.zoomgov.com/meeting/regist…

A new article in Metabolite describes extensions to our Omics Dashboard tool for visual analysis of metabolomics and multi-omics data.  We can see which cellular systems are changing their activity levels across multiple omics data types. mdpi.com/2218-1989/14/1…

A new, updated version of the FlyCyc (Drosophila melanogaster) metabolic network is now available as part of BioCyc. This new release includes substantial updates to functional, genomic and nomenclature data. tinyletter.com/FlyBase/letter… biocyc.org/organism-summa…

Introducing the newly curated BioCyc genome database for Streptococcus pneumoniae strain D39V, a leading model of human pneumococcal pathogenesis: Info for hundreds of proteins, pathways, and regulatory information have been added. biocyc.org/organism-summa… #Pneumonia

Introducing our New Genome Browser: The new version is much faster--it zooms and pans in real time. New features include the ability to extract sequence regions. Check it out at: biocyc.org/genbro/genbro.…

BioCyc has just released a curated genome database for the hypervirulent pathogen Klebsiella pneumoniae NTUH-K2044. More than 300 proteins and pathways had literature-based curation. biocyc.org/GCF_000009885/… #klebsiella #microbiology #bacteriology #bacteria

BioCyc version 27.5 released! For more info, please visit: biocyc.org/release-notes.…

Upcoming BioCyc Webinar: The MetaCyc Metabolic Pathway Database Nov 16, 2023 @ 9am Pacific For more info and registration: sri.zoomgov.com/meeting/regist…

Upcoming BioCyc Webinars: BioCyc Transcriptomics and Metabolomics Data Analysis Nov 1, 2023 @ 9am Pacific Time For more info and registration: sri.zoomgov.com/meeting/regist…