Samtools Team

Release 1.23.1 of HTSlib, SAMtools, and BCFtools is now available from GitHub. This fixes crashes that could occur when reading malformed CRAM or GZI files. See htslib.org/download/ for links to tarballs and release notes.

Release 1.23 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.22.1 of HTSlib and SAMtools is now available from GitHub. This fixes crashes that could happen when reading malformed CRAM files, or when writing files with very long secondary alignments as CRAM 3.1. See htslib.org/download/ for links to tarballs and release notes

Release 1.22 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.21 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.20 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Oops! Samtools 1.19.1 had a bug which broke filtering on unordered BED files. This is now fixed in release 1.19.2. See htslib.org/download/ for links to tarballs and release notes.

Release 1.19.1 of HTSlib, and SAMtools is now available from GitHub. This fixes a regression in 1.19 that caused written CRAM files to be much bigger than necessary, along with other bugs. See htslib.org/download/ for links to tarballs and release notes.

Release 1.19 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.18 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.17 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.16.1 of SAMtools is now available from GitHub. This fixes some bugs in the new template-coordinate sort feature. See htslib.org/download/ for links to tarballs and release notes.

Release 1.16 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.15.1 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes. This fixes bugs found in the 1.15 release, including a regression in the samtools view --region-file option.

Release 1.15 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.14 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.13 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Release 1.12 of HTSlib, SAMtools and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes.

Play it again, SAM(tools)? gigasciencejournal.com/blog/play-it-a…

HTSlib paper academic.oup.com/gigascience/ar…