Yuki NISHIMURA

New online! Phage host range: determinants, dynamics and applications dlvr.it/TSBcBp

» Treemble: A Graphical Tool to Generate Newick Strings from Phylogenetic Tree Images | Bioinformatics | Oxford Academic academic.oup.com/bioinformatics…

» Predicting microbial community responses to disturbance using genome-resolved trait-based life-history strategies | The ISME Journal | Oxford Academic academic.oup.com/ismej/advance-…

Transposable elements are driving rapid adaptation of Enterococcus faecium doi.org/10.1038/s41586…

Decade-long warming accelerates antibiotic resistance in grassland soils doi.org/10.1038/s41586…

The ecology of bacterial attachment to phytoplankton dlvr.it/TS9bdW #MicroSky

Revisiting the greatness of Earth’s great oxidation doi.org/10.1038/s43247…

An enhanced domestication method for uncultured bacteria doi.org/10.1093/ismeco…

Claude Codeを一番安いプランで使い始めたら、一週間で料金体系が変わってしまった...

Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis dlvr.it/TS8TVG #MicroSky

AlphaFold v3.0.2 github.com/google-deepmin… * Blackwell世代GPU (RTX50xxなど)に正式対応 * JackhmmerなどでMSAを取得する際の計算の高速化手法が追加されてる

Phytophthora targets plant extracellular vesicles to promote infection dlvr.it/TS7Tzb #MicroSky

Extracellular vesicle-mediated metabolic exchange shapes the seasonal assembly of aquatic bacterial communities doi.org/10.1038/s44221…

Structural basis for DNA processing and membrane translocation by ComEC in natural transformation doi.org/10.1126/scienc…

A bacterial CARD–NLR-like immune system controls the release of gene transfer agents dlvr.it/TS4Xvb #MicroSky

GTDBのバージョンがr232に上がった様子 gtdb.ecogenomic.org

Cyanobacteria are an ancient clade of phototrophic prokaryotes. But out of all the cyanobacteria available, why did Synechocystis sp. PCC 6803 become the default laboratory model? This #JBacteriology review offers insights: asm.social/2TD

Engineered Vibrio natriegens lysate can replace multiple components of cell culture media doi.org/10.64898/2026.…

Phylogenomics of Asgard archaea reveals a unique blend of prokaryotic-like horizontal transfer and eukaryotic-like gene duplication | Nature Communications nature.com/articles/s4146…

Bianchini et al. (2026-04, Molecular Biology and Evolution) (open access) AliFilter: a Machine Learning Approach to Alignment Filtering