ENCODE DCC

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ENCODE DCC

ENCODE DCC

@EncodeDCC

The Data Coordinating Center for the Encyclopedia of DNA Elements. Free, accessible data at your fingertips.

Stanford, CA Entrou em Aralık 2011
488 Seguindo3.5K Seguidores
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Mark Gerstein
Mark Gerstein@MarkGerstein·
Excited to announce that "The EN-TEx resource of personal epigenomes & variant impact models" just came out: Cell.com/cell/fulltext/…. The paper represents the culmination of many years of work by >100 authors & has lots of useful information about allele-specific activity.
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Davide Cittaro
Davide Cittaro@daweonline·
Does anybody know if chromatin segmentation (either ChromHMM or Segway) for NIH3T3 cells is available? I admit I’m not able to find it (mm10, possibly)
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4DN DCIC
4DN DCIC@4dn_dcic·
Looking forward to seeing everyone (virtually) and hearing about all the exciting new research at the @4DNucleome annual meeting today! DCIC demo session tomorrow (Thursday) at 11:53am PST!
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ENCODE Project
ENCODE Project@ENCODE_NIH·
**RFA Announcement** Supporting Talented Early Career Researchers in Genomics RFA-HG-22-001 For more information: ow.ly/7kTc50H6bZq
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CancerGenomicsCloud
CancerGenomicsCloud@genomicscloud·
Interested in genome-wide profiles of chromatin accessibility? Perform quality control and signal processing to produce alignments and measures of enrichment with the ENCODE ATAC-seq Pipeline, released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC
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CancerGenomicsCloud
CancerGenomicsCloud@genomicscloud·
Interested in analyzing chromatin modifications and binding patterns of transcription factors and other proteins? Check out the ENCODE ChIP-Seq Pipeline 2 released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC
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Cellosaurus
Cellosaurus@Cellosaurus·
Today we reached 130,000 #cellline entries in the #Cellosaurus. We tried to find a good image representing that number and found this picture of 130,000 spectators attending a mega concert of Madonna on August 29, 1987 at Parc de Sceaux near Paris
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Ali Mortazavi
Ali Mortazavi@calizavi·
I don’t think the long read community realizes how long PacBio cDNA reads can be with the right protocol & much higher quality thanks to CCS. The final @ENCODE_NIH long read dataset for human and mouse will be a treasure trove for the community!
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GencodeGenes
GencodeGenes@GencodeGenes·
GENCODE are excited to support international community efforts to produce reference annotation for human ORFs discovered by Ribo-seq. Preprint: bit.ly/2Ty4Mdo Website text: bit.ly/3iCFiX0
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Ben Hitz
Ben Hitz@bonscotthoughts·
... full time data scientists and professionals, thousands - maybe millions of lines of code, and training. In particular, scientists will have to be re-trained to be more collaborative, more open, and more rigorous in detailing exactly how to reproduce their work. 15/x
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Ben Hitz
Ben Hitz@bonscotthoughts·
Preliminary findings and interesting data could be shared instantaneously with collaborators across the globe. This will never happen without top down organization. It would require equipment on the ground, computational clouds, ... 14/x
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