GencodeGenes

409 posts

GencodeGenes

GencodeGenes

@GencodeGenes

Human And Vertebrate Analysis aNd Annotation (HAVANA) team, part of the Ensembl group at the European Bioinformatics Institute.

Присоединился Kasım 2011
262 Подписки1.4K Подписчики
GencodeGenes
GencodeGenes@GencodeGenes·
The HAVANA team @emblebi has multiple open positions to support the GENCODE & PARADIGM projects. We're recruiting annotators (bit.ly/4qG28g5), an annotation project lead (bit.ly/4qv05v6), & bioinformaticians (bit.ly/4qevYIY). We’d love to hear from you!
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GencodeGenes
GencodeGenes@GencodeGenes·
These new transcripts all have a CDS that is based upon the MANE_Select transcript for the gene, but have unique splicing either within their UTRs or between internal coding exons. Each of these unique splice sites has passed our stringent QC filters to ensure their accuracy.
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GencodeGenes
GencodeGenes@GencodeGenes·
This release sees the addition of >121000 new full-length human protein-coding transcripts based on long-read RNA-seq data that have been integrated into GENCODE using the TAGENE annotation pipeline.
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GencodeGenes
GencodeGenes@GencodeGenes·
The latest human GENCODE releases for Human (49) and Mouse (M38), have just been released. They're available via gencodegenes.org and visible in @ensembl genome browser as part of Ensembl 115 ensembl.org
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GencodeGenes
GencodeGenes@GencodeGenes·
The latest human GENCODE releases for Human (48) and Mouse (M37), have just been released. They're available via gencodegenes.org and visible in @ensembl genome browser as part of Ensembl 114 ensembl.org
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GencodeGenes
GencodeGenes@GencodeGenes·
We're pleased to share our GENCODE 2025 NAR database paper: tinyurl.com/3etnfw4j Thanks to all our collaborators, friends and users. This is now the main citation for our resource, and hopefully also a good explanation of how and why we do what we do.
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GencodeGenes
GencodeGenes@GencodeGenes·
3/ How do we interpret immunopeptidomics support in biological terms? How many of these ORFs are bona fide proteins as opposed to unstable peptides or aberrant products? What does this mean for annotation? These are open questions and our work continues... @genenames @uniprot
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GencodeGenes
GencodeGenes@GencodeGenes·
2/ Relatively few Ribo-seq ORFs have peptide support from tryptic digests, although substantial numbers are supported by immunopeptidomics data. Many thanks to our large number of collaborators @EricWDeutsch @r_l_moritz @johnprensner @s_heesch
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GencodeGenes
GencodeGenes@GencodeGenes·
1/ GENCODE continue to work on the annotation of non-canonical translations identified by Ribo-seq, and are pleased to support this preprint which examines which ORFs express protein products: biorxiv.org/content/10.110…
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GencodeGenes ретвитнул
AnaConesa
AnaConesa@anaconesa·
I´m thrilled to see our #LRGASP paper published in @naturemethods today. This is the work of many to benchmark long-read methods for transcriptomics, and a must-read paper for those using lrRNA-seq. Special thnks to @FJPardoPalacios and @TheBrooksLab (1/6) rdcu.be/dJ9ev
AnaConesa tweet media
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EMBL-EBI
EMBL-EBI@emblebi·
DNA and RNA sequencing methods are rapidly evolving, each with its own benefits and challenges. Find out how the Long-read RNA-Seq Genome Annotation Assessment Project (LRGASP) can help you choose the right long-read sequencing method for your research. nature.com/articles/s4159…
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GencodeGenes
GencodeGenes@GencodeGenes·
Out today: the Long-read RNA-Seq Genome Annotation Assessment Project (LRGASP) paper, featuring contributions from many GENCODE members, a systematic evaluation of methods for long-read transcript detection and quantification: nature.com/articles/s4159…
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Rory Johnson
Rory Johnson@_Rory_Johnson_·
🥳👇🧠Calling all RN-Aficionados! The deadline for #ncRNA2024 has been extended to 11 June. Remaining places are filling fast so be sure to submit your Abstract ASAP. @RNASociety @jrRNAscientists @NCCR_RNADisease @GencodeGenes @NCCR_RNADisease @RNASociety #RNA #ncRNA #lncRNA
MDPI Sciforum - Conferences@sciforum

📢Following great interest and numerous requests, the submission deadline for #ncRNA2024 has been extended to 11 June!🧬 ⁠📅Submit your abstract now to claim our Early Bird offer 🐦bit.ly/3vXOwGl 🌟Don’t miss this last chance to showcase your research to the best and brightest in the ncRNA community!✨

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GencodeGenes
GencodeGenes@GencodeGenes·
That might be a gin&tonic in my hand, but it still holds true that #recount3 is a wonderful resource and super useful in our annotation efforts! Great to meet you @lcolladotor!!
🇲🇽 Leonardo Collado-Torres@lcolladotor

Thank you Toby Hunt from @emblebi for agreeing to record this shoutout from @GencodeGenes to #recount3 Not every day do you get to hear praise from users! This is a hugely motivating! doi.org/10.1186/s13059… #BoG24

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Rory Johnson
Rory Johnson@_Rory_Johnson_·
👀👇☀️Dear Colleagues, there are 2 weeks left to submit an abstract at our October conference #ncRNA2024! Why come? -Brilliant international speakers -fantastic city -loads of networking + social time -high probability of selected talks. So come join us!
GOLD Lab@GOLDLab_UCD

⚠️Two weeks left to submit your abstracts for #ncRNA2024!⚠️ 👥Don't miss out on the opportunity to meet with leading experts in the field and catch up on their latest research and breakthroughs

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@emblebi @ensembl @genenames @uniprot @EricWDeutsch @r_l_moritz @anaconesa @TheSheynkmanLab