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We are still thrilled to announce ENCODE as the latest AWS Public Data Set! registry.opendata.aws/encode-project/ #OpenScience @ENCODE_NIH
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ENCODE DCC
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ENCODE DCC
@EncodeDCC
The Data Coordinating Center for the Encyclopedia of DNA Elements. Free, accessible data at your fingertips.
Stanford, CA Sumali Aralık 2011
488 Sinusundan3.5K Mga Tagasunod
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Excited to announce that "The EN-TEx resource of personal epigenomes & variant impact models" just came out: Cell.com/cell/fulltext/…. The paper represents the culmination of many years of work by >100 authors & has lots of useful information about allele-specific activity.
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Does anybody know if chromatin segmentation (either ChromHMM or Segway) for NIH3T3 cells is available? I admit I’m not able to find it (mm10, possibly)
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Read about the @4DNucleome data portal, now out in @NatureComms #FAIRdata nature.com/articles/s4146…
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Are you running the data or are you run over by petabytes of data? These ten simple rules will help you to tame large-scale datasets. Read more: ow.ly/BnnS50HUP3U
@Chai_Arkarachai #bioinformatics #genomics #BigData
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Supporting Talented Early Career Researchers in Genomics
RFA-HG-22-001
grants.nih.gov/grants/guide/r…
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ENCODE DCC nag-retweet
Looking forward to seeing everyone (virtually) and hearing about all the exciting new research at the @4DNucleome annual meeting today! DCIC demo session tomorrow (Thursday) at 11:53am PST!
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**RFA Announcement**
Supporting Talented Early Career Researchers in Genomics
RFA-HG-22-001
For more information: ow.ly/7kTc50H6bZq
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Model organism databases are in jeopardy | Development | The Company of Biologists journals.biologists.com/dev/article/14…
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Interested in genome-wide profiles of chromatin accessibility? Perform quality control and signal processing to produce alignments and measures of enrichment with the ENCODE ATAC-seq Pipeline, released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC
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Interested in analyzing chromatin modifications and binding patterns of transcription factors and other proteins? Check out the ENCODE ChIP-Seq Pipeline 2 released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC
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ENCODE DCC nag-retweet
Today we reached 130,000 #cellline entries in the #Cellosaurus. We tried to find a good image representing that number and found this picture of 130,000 spectators attending a mega concert of Madonna on August 29, 1987 at Parc de Sceaux near Paris
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I don’t think the long read community realizes how long PacBio cDNA reads can be with the right protocol & much higher quality thanks to CCS.
The final @ENCODE_NIH long read dataset for human and mouse will be a treasure trove for the community!
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GENCODE are excited to support international community efforts to produce reference annotation for human ORFs discovered by Ribo-seq. Preprint: bit.ly/2Ty4Mdo Website text: bit.ly/3iCFiX0
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ENCODE DCC nag-retweet
Full details of how #LRAGSP Challenge 1 will be evaluated in thread below. See link for more info.
AnaConesa@anaconesa
#LRAGSP Twitter thread of the week is about the evaluation of Challenge 1. Challenge 1 is transcript reconstruction using long reads when a well-annotated genome is available. More information about #LRGASP can be found at gencodegenes.org/pages/LRGASP/ 1/12 @GencodeGenes
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This is an infrastructure project.
Join us gopetition.com/petitions/a-un…
@anshulkundaje @ontowonka 16/16
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... full time data scientists and professionals, thousands - maybe millions of lines of code, and training. In particular, scientists will have to be re-trained to be more collaborative, more open, and more rigorous in detailing exactly how to reproduce their work. 15/x
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