Garmire Lab

This is the official Twitter account for Garmire Lab. We will share our works in the account.

Another new paper from our group: "Investigate the Effects of Preeclampsia Severity, Race and Fetal Sex on Subsequent Maternal Complications Using EHR Data From Over 100,000 Pregnancies" with cross-insitutional validation @CedarsSinai @VUMChealth Link: onlinelibrary.wiley.com/doi/10.1002/im…

Congratulations to Xiaotong for the GigaScience paper "Cord blood DNA methylation and cell type composition are not significantly associated with severe preeclampsia, after cell type and clinical covariate adjustment". Link: pubmed.ncbi.nlm.nih.gov/41543303/

The #multiomics and #multiethnic analysis on the impact of maternal #obesity and #cancer risk prediction is officially published on @GigaScience. Check of the paper here: doi.org/10.1093/gigasc… @GarmireGroup

😍🥳🤩Our work starting *10 years* ago on #maternal #obesity impact over #multiomics of cord blood in #offspring finally got published today on @GigaScience! I was a fresh new faculty of @UHCancerCenter then! A thread. 1/n doi.org/10.1093/gigasc…

Just published! Our latest review in "Seminars in Nephrology" summarizing recent advancements, key challenges, and potential solutions in #omics data integration in #nephrology, supporting the goals of #PrecisionMedicine. Co-authored with Yuheng Du, PhD student at the lab of the great Dr. @GarmireGroup at the @UMich and in collaboration with the talented Tianqing Feng, computational scientist at the Center for Precision Medicine @UTHealthSA! Grateful for the opportunity to learn from Dr. Garmire, awardee of US Presidential Early Career Scientists and Engineers in 2019! #MultiOmics #Nephrology #PrecisionMedicine #BiomedicalResearch #GarmireLab #CenterForPrecisionMedicine Center for precision of Medicine: wp.uthscsa.edu/cpm/ @GarmireLab : garmiregroup.org @UTHealthSA @UTHSAResearch @UTHealthSAlumni @UTHealthSA_UP @UTHealthSA_OPA @IIMSCTSA @utsystem @UTHealthSANeph Take a look 👇👇

A huge congratulation goes to Xiaotong Yang, who has been awarded the @umichgradschool 2025 Rackham Predoctoral Fellowship!🎉 🥳👏

Congratulations to Yuheng and all co-authors! 🎉The multi-ethnic and multi-omics study on the effect of maternal obesity including the Native Hawaiian population has been accepted in principle for publication in GigaScience. Link to preprint: medrxiv.org/content/10.110…

Congratulations to Tay and all co-authors! Originator has been officially accepted for publication in Genome Biology. 🎉"Originator, a computational tool separating single-cell RNA-seq by genetic and contextual information".

Updated preprint (under review at GigaScience): Leveraging a maternal obesity model for the independent prediction of cancer status in TCGA samples. Explore the intersection of maternal health and cancer biology: medrxiv.org/content/10.110…

New preprint from Garmire's Lab (under review at Genome Biology): Originator, a novel tool that deciphers single cells by genetic origin and separates immune cells of blood contamination from those of expected tissue-resident cells. Link: biorxiv.org/content/10.110…

New revised preprint from Garmire's Lab: Discover overlooked complications after #preeclampsia from three real-world medical record datasets of over 100,000 pregnancies doi.org/10.1101/2023.1… Utilizing large-scale #EHR data from @umichmedicine @CedarsSinai and UKBiobank

Congratulations to Yijun on reaching such a significant milestone!🎉🥳

Belated congratulations to @jenny589446011 who was co-advised by me and Dr. Jian Kang in @umichsph biostat. She graduated with PhD and now is a postdoc with @rafalab. 🤩❤️

New pre-print from our group on a unique Native Hawaiian and Pacific Islander (NHPI) cohort examining the impact of maternal pre-pregnancy obesity with multiome: medrxiv.org/content/10.110… #Obesity #MaternalHealth #Epigenetics #Multiomics

Recent lab outing to celebrate the start of a new school year 🔭🧪🔬🧬 Excited to welcome visiting students from HUST and USTC, along with our new Master’s, PhD students, and RAs this semester! #Bioinformatics #worklifebalance

@HaileyBallard20 @dominicklemas and @GarmireLab exploring the utilities of electronic health record data to predict #preeclampsia diagnosis time, using @UMich precision health data and validated by @UFHealth data, is accepted by @jmirpub. medrxiv.org/content/medrxi…

New preprint from our group: biorxiv.org/content/10.110… "Originator" helps decipher single cells by genetic origin and separates blood cells from tissue-resident cells.

Worried about #blood #contamination in your single cell RNA-Seq data? Want to exam the difference in blood vs tissue immune cells? Want to check the #genetic background differences among cells? Check out our Originator. #singlecell #TME #immuneSystem biorxiv.org/content/10.110…

Celebrating 2024 International Women's Day with female researchers and scientists @GarmireGroup #InternationalWomensDay

New preprint from @GarmireGroup addresses a comprehensive examination of PE's long-term effects utilizing large-scale EHR and advanced statistical methods: "Discover overlooked complications after preeclampsia using electronic health records". medrxiv.org/content/10.110…