Human BioMolecular Atlas Program (HuBMAP)

Red - podocytes, green - endothelial cells, yellow - smooth muscle cels and arterioles, cyan - thick ascending limb tubules, blue - proximal tubules, brown - distal convoluted tubules

Pi day just passed, so you know what that means! It's time for a slice of kidney pi(e), and that's a renal treat! This CODEX image of a kidney pi slice was made by #hubmap researchers Drs. Tarek Ashkar & Sanjay Jain @wustl, and we're not being irrational!

Stroma and ECM - green and blue; Endothelium - red, white, magenta, and cyan; Macrophages - yellow

Not to be ovary-serious, but this CODEX image of an ovary made by HuBMAP researchers Elizabeth Tsui, Hannah McDowell (Laronda lab at @NUFeinbergMed) & Alex Cabrera, Jean Rosario (O'Neill lab @PennMedicine) is egg-squiste! Hopefully, it fertilizes and catalyzesyour imagination!

DYK that bone marrow makes your blood cells? To get to the meat of the matter, come see this MIBI-TOF image visualized in CellTune, a software that classified the cells across the tissue section. Not to be too bloody marrow-minded, but this CellTune software sings! 😊

Yellow – lipid droplets, green – natural killer cells, light blue – endothelial cells, magenta – smooth muscle cells, orange – erythroid cell precursors, white – type I collagen, dark blue – hematopoietic stem cells

Decided to see this mass spec image of the decidua from MikeAngeloLab @stanford? Excellent choice! The decidua lines the uterus during pregnancy & forms the placenta. This image also captures fetal cells within & around maternal spiral arteries because we always deliver for you!

Nuclei - blue, Immune cells - green, basement membrane - red, cardiomyocyte membranes - yellow, smooth muscle cells - cyan, endothelial cells - magenta

To beat or not to beat that is the question Whether 'tis nobler in the mind to skip a beat Or pulsate with joy over the heartistry Of an image made by @GEHealthCare Using CellDIVE to see inner workings Of the heart is work not done in vein Tis a consummation devoutly to be wish'd

Mark your calendars for the @_hubmap Workshop on Jan 29th! 💻Hands-on intro to the HuBMAP Data Portal: ASCT+B tables, spatial & single-cell data, visualizations, downloads, and in-place analysis with Workspaces. Apply by Jan 22 👉 cmu.zoom.us/meeting/regist…

Red - neurons, green - astrocytes, yellow - microglia, white - neuronal fibers, especially large axons, blue - inhibitory neurons, cyan - oligodendrocytes Cell DIVE image of human brain for Organ Mapping Antibody Panel (OMAP #35)

It's that time again HuBMAP Holiday Haiku Our present to you Are the holidays On your mind? A deep Cell DIVE From @GEResearch Antibodies show Intricacies of your mind In fluorescent lights Light up your brain cells Proteins show differences and Make merry pictures

red - epithelial cells, light purple - cell membranes.

Blue - nuclei, light green - cells involved in DNA damage and repair, in response to UV-induced damage, dark purple - dermal fibroblasts, light blue - dermal fibroblasts, cyan - T cells, dark green - smooth muscle cells, yellow - vasculature. magenta - proliferating cells

Hair we go again, taking a deep dive with Cell DIVE to see the different cell types within a hair follicle & the skin cells surrounding it from @GEResearch's Liz McDonough. These are far more than skin deep!

The 10th release of the Human Reference Atlas is now live! See what's new at humanatlas.io/release-notes/… 🎉 @katycns @IULuddy @AndreasBueckle #datavisualization #HumanReferenceAtlas

Seeking something to make your heart skip a beat? Fishing for results but can’t seem to find the right place to drop your line? Come see Dr. Long Cai & his lab @caltech’s seqFISH image, which shows where in the human heart RNA transcripts reside! It’s absolute heart-istry!

Lightsheet fluorescence microscopy not as illuminating as you hoped? Limitations of image processing tools leaving gaps in your 3D images? Check out NetTracer3D, an open-source package from NIH researcher Liam McLaughlin that will fill in the dark spots and brighten your day!

Blue = nuclei, yellow = hematopoietic stem and progenitor cells, red = fibroblasts and extracellular matrix, green = smooth muscle cells, cyan = cardiac Purkinje fibers, white = monocytes and macrophages, magenta = cytotoxic T lymphocytes

We aorta take a moment to make our hearts flutter and celebrate #worldheartday . Let the heart-istry of this #CODEX image of the left ventricle from Dr. Kai Tan's lab @childrensphila make your heart skip a beat!