The Assemblathon

Validation of reference-assisted assembly using existing and novel Heliothine genomes - ScienceDirect buff.ly/3p2aZLk

CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes biorxiv.org/content/10.110…

Benchmarking and Assessment of Eight De Novo Genome Assemblers on Viral Next-Generation Sequencing Data, Including the SARS-CoV-2 | OMICS: A Journal of Integrative Biology liebertpub.com/doi/10.1089/om…

Learning to Untangle Genome Assembly with Graph Convolutional Networks arxiv.org/abs/2206.00668…

Learning to Untangle Genome Assembly with Graph Convolutional Networks arxiv.org/abs/2206.00668…

Does anyone have recommendations on programs for genome alignment and synteny analysis? #pacbio #genomealignment #synteny #assembly #genomeassembly @assemblathon

HGGA: hierarchical guided genome assembler - BMC Bioinformatics bmcbioinformatics.biomedcentral.com/articles/10.11…

Benchmarking of long-read sequencing, assemblers and polishers for yeast genome academic.oup.com/bib/advance-ar…

slag: A program for seeded local assembly of genes in complex genomes onlinelibrary.wiley.com/doi/10.1111/17…

Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation - Nature Methods nature.com/articles/s4159…

NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology peerj.com/articles/13056

So proud and excited for our #T2T work on "A complete reference genome improves analysis of human genetic variation"! Im enormously grateful to the whole team for their tireless work and support @JHU_BDPs @JHUCompSci @HopkinsCMDB science.org/doi/10.1126/sc…

The End of the Beginning of Human Genome Sequencing? Quick thoughts on today's #T2T publishing barrage omicsomics.blogspot.com/2022/03/the-en…

Happy to share this happy accident and collaboration we've been working on for the last two years! In summary: We accidentally assembled a Poa pratensis reference genome. biorxiv.org/content/10.110…

Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads - Nature Biotechnology nature.com/articles/s4158…

High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads biorxiv.org/content/10.110…

A simple guide to de novo transcriptome assembly and annotation academic.oup.com/bib/advance-ar…

De Novo Assembly of Linked Reads Using Supernova 2.0 link.springer.com/protocol/10.10…

Graph theoretical Strategies in De Novo Assembling ieeexplore.ieee.org/abstract/docum…

ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs - Abstract - Europe PMC buff.ly/3HIIg5A