Integrative Biophysics Group

157 posts

Integrative Biophysics Group banner
Integrative Biophysics Group

Integrative Biophysics Group

@IntBioPhysics

Investigating biophysics of living systems through an integrative lens . PI: Ahmed El Hady ( @zamakany ) . For inquiries, email: [email protected]

Konstanz Tham gia Haziran 2021
1 Đang theo dõi465 Người theo dõi
Tweet ghim
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
Quotes guiding our philosophy of pursuing knowledge at the Integrative Biophysics Group
Integrative Biophysics Group tweet media
English
0
1
5
1.7K
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
Check out this workshop organized by our PI Ahmed El Hady @zamakany, to take place at @HHMIJanelia
Ahmed El Hady@zamakany

So excited we are organizing again with @AllysonSgro the Junior Scientist workshop for theoretical biophysics to take place at @HHMIJanelia from September 13 - 18, 2026 . Janelia will cover the cost of accommodation, meals and reasonable travel expenses for accepted participants. Deadline: April 16, 2026 Website: janelia.org/you-janelia/co… This workshop is intended as a "by the students, for the students" meeting. Other than the organizers and invited speakers, participants will include only students and postdocs working on a variety of problems in theoretical biophysics, broadly defined. Topics include but not limited to: ·Physical principles underlying biological function in molecular, cellular, multicellular systems ·Theory of organismal development ·Theory of animal behavior, ecological systems, and evolutionary dynamics · Data driven identification of principles in biophysical systems · Physics of active matter · Non–equilibrium thermodynamics of living systems

English
0
1
1
163
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
Come join our group
Ahmed El Hady@zamakany

Pls RT this ad: I have an opening for a PhD student in my @IntBioPhysics group to begin ASAP , part of a collaboration with the group of Ilya Nemenman @INemenman at Emory university. Deadline: 1st November Details here: stellen.uni-konstanz.de/jobposting/099… and application portal here: stellen.uni-konstanz.de/en/jobposting/… We are seeking a doctoral student with a quantitative background. Ideally, the candidate should have a master degree in physics but other quantitative backgrounds will be considered. The researcher will be based in the Integrative Biophysics group at the University of Konstanz and Max Planck Institute of Animal Behaviour, located in Konstanz, Germany. The project summary is as follows: Project Title: Inferring dynamical interactions in social groups Project Abstract: Social interactions are one of the most foundational building blocks of group behaviors, shaping decision making strategies across ecologies. Social groups consist of small number of individuals in contrast with collectives that consist of large number of agents. Despite the importance of social groups as a building block of living systems, there is little understanding of mechanistic details of the nature of those social interactions and how they shape emergent social functional properties. This stands in contrast with physics of collectives, which usually focus on the dynamics of very large group of individuals and have been thoroughly studied. In an experimental system or in field observations tackling social behaviors, we do not know a priori the social forces, nature of those interactions and their dynamics. Recent advances in software and hardware allow us to track the behavior of multiple individuals over extended spatio-temporal scales. Thus it is crucial to develop methodologies to infer dynamical social interactions and social forces from experimental observations. This relates closely to work done inferring "social forces" from dusty plasmas. Recent theoretical work has developed an information theoretic approach to estimate intrinsic motivation, based on maximizing an agent's empowerment (defined as the mutual information between its past actions and future states). This approach can be used to study social behaviours, where individuals choose actions without an explicit reward signal. In this project, we are planning to apply this framework to infer and understand social behaviour of small animal groups specifically locusts, mice and marmosets monkeys offering not only a mechanistic insights into mechanisms of social organization but also make quantitative evolutionary comparison of social behaviours. 1. Yu, Wentao, Eslam Abdelaleem, Ilya Nemenman, and Justin C. Burton. "Physics-tailored machine learning re-veals unexpected physics in dusty plasmas.Proceedings of the National Academy of Sciences 122, no. 31 (2025): e2505725122. 2. Tiomkin, Stas, Ilya Nemenman, Daniel Polani, and Naftali Tishby. "Intrinsic motivation in dynamical control sys-tems.” PRX Life 2, no. 3 (2024): 033009.

English
0
1
1
313
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
Very glad that Albin Salazar @latinchemist is joining our group as a postdoctoral fellow where his goal is to wed multi-level paradigms with multi-scale data integration to elucidate mechanistic behaviors pertinent in diverse foraging scenarios.😄
Integrative Biophysics Group tweet media
English
0
0
1
361
Integrative Biophysics Group đã retweet
Ahmed El Hady
Ahmed El Hady@zamakany·
Can one bring together Reinforcement learning and Drift Diffusion models to unravel cognitive mechanisms underlying collective foraging ? Congrads to Jonathan Marienhagen , Lisa Blum Moyse and Dominik Deffner on this new study. Very happy that @IntBioPhysics postdoc Lisa and myself were part of this collaboration. Preprint here: osf.io/preprints/psya…
Ahmed El Hady tweet media
English
0
5
10
1.3K
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
The school director is our PI Ahmed El Hady ( @zamakany ) . It is such a pleasure to host all those amazing students and faculty in Konstanz.
Ahmed El Hady@zamakany

Konstanz school of collective behavior 2025 was a great success. Amazing students and faculty , who spent so many hours discussing state of the art collective behavior research. We are already preparing for the 2026 version so stay tuned. Details to be updated here : exc.uni-konstanz.de/kscb/ During the last day of the school, every student gave a short presentation about their school project, thread: / n

English
0
0
1
79
Integrative Biophysics Group đã retweet
Ahmed El Hady
Ahmed El Hady@zamakany·
So happy this paper is finally out in PRX Life (journals.aps.org/prxlife/abstra… ) . Let me tell you more about the story of this paper in this thread : Foraging is my big passion and step by step I hope to develop a general theory of foraging , predicting decision strategies from the individual to the social. This time we are extending our foraging models to the social domain. Along with a very talented postdoc in my @IntBioPhysics group Lisa Blum Moyse , we developed an analytically tractable model to predict social foraging strategies in an egalitarian group . We assumed that agents would couple through different social information sharing mechanisms as shown in this figure and derived the strategies analytically , we got some exciting results:
PRX Life@PRX_Life

Cohesion, residence time, and habitat-choice accuracy emerge as key metrics shaped by social interaction, revealing exploration-exploitation trade-offs in the collective foraging patterns of large egalitarian groups. go.aps.org/44GrQJi

English
1
2
11
1.3K
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
Check out this new paper from our group by our very own talented postdoc Lisa Blum Moyse and our PI @zamakany We present an analytically tractable model to give us mechanistic insights of how animals socially forage under different forms of social couplings.
PRX Life@PRX_Life

Cohesion, residence time, and habitat-choice accuracy emerge as key metrics shaped by social interaction, revealing exploration-exploitation trade-offs in the collective foraging patterns of large egalitarian groups. go.aps.org/44GrQJi

English
0
1
5
410
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
Job opportunity in our group . Check it out and share it around
Ahmed El Hady@zamakany

Please share around this Job ad : Are you excited about foraging ? do you want to analyse multidimensional large scale behavioural, metabolic and neural data ? I have a job opening for you :D I have an opening for a postdoc in my @IntBioPhysics group. The Postdoc will be working as part of a recently funded Human Sciences Frontiers Program (HSFP) research grant ‘”Neurometabolic mechanisms underlying social foraging” in collaboration with the experimental groups of Robert Froemke (New York University) and Jee Hyun Choi (Korean Institute of Science and Technology). The project aims to understand neuro-metabolic mechanisms underlying social foraging. The PostDoc will have the opportunity to travel to the collaborators in New York and Seoul. All details here and below in the thread : stellen.uni-konstanz.de/jobposting/817…

English
0
0
1
158
Integrative Biophysics Group đã retweet
Ahmed El Hady
Ahmed El Hady@zamakany·
Check out this exciting junior scientist workshop focusing on theoretical biophysics . Deadline June 10, 2025 Link: janelia.org/you-janelia/co… We are inviting postdocs and graduate students working on a variety of problems in theoretical biophysics, broadly defined. Topics include but not limited to : Physical principles underlying biological function in molecular, cellular, multicellular systems Theory of organismal development Theory of animal behavior, ecological systems, and evolutionary dynamics Data driven identification of principles in biophysical systems Physics of active matter Non–equilibrium thermodynamics of living systems
Ahmed El Hady tweet media
English
0
2
6
495
Integrative Biophysics Group đã retweet
Ahmed El Hady
Ahmed El Hady@zamakany·
If you are around in Berlin , make sure to mark your calendar on May 13th when I will be giving my seminar hosted by @liviadehoz . All details In this link : sfb1315.de/events/integra…
Ahmed El Hady tweet mediaAhmed El Hady tweet media
English
0
1
6
319
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
A new paper from our group @IntBioPhysics led by our PI @zamakany using foraging theory to reformulate saccadic eye movements as a patch foraging problem
Ahmed El Hady@zamakany

Very excited that this cute study is finally out as a preprint. It began in @neurobridges 2023 when Tal Nahari approached me after my lecture on foraging theory wondering : " I have some saccadic eye movement data that looks like your patch foraging model" . Here we are, two years after, it turns out that one can recast saccadic eye movements during an information exploration task as a patch foraging problem. We claim that this might be a generic property of saccadic eye movement ( Share your data with us if you want :D ) . Follow along the thread to know more /n

English
0
1
3
353
Integrative Biophysics Group đã retweet
Ahmed El Hady
Ahmed El Hady@zamakany·
Deadline for the Konstanz School of Collective Behavior 2025 is approaching. Apply now :D Deadline: April 15th, 2025.
Ahmed El Hady@zamakany

Plz share around : The tradition continues, the Konstanz School of Collective Behavior will take place from July 21st to August 8th , 2025. Application deadline: April 15 ( exc.uni-konstanz.de/kscb/applicati… ) . We have an amazing line up of speakers covering all aspects of collective behavior across a variety of systems ( more faculty to be added) : Iain Couzin ( Max Planck Institute of Animal Behavior , Konstanz) @icouzin Peter Dayan ( Max Planck Institute of Biological Cybernetics, Tübingen) @MPICybernetics Ilya  Nemenman ( Emory University , USA) @INemenman Yonatan Loewenstein ( Hebrew University of Jerusalem, Israel) @ELSCbrain Aneta Koseska ( Max Planck Institute of Neurobiology of Behavior, Bonn) @KoseskaL Francesco Ginelli ( Università degli Studi dell'Insubria, Italy) Thejasvi Ravindra  Beleyur ( Max Planck Institute of Animal Behavior, Konstanz) @BeleyurThejasvi Liang Li ( Max Planck Institute of Animal Behavior, Konstanz) Giovanni Reinna ( University of Konstanz, Konstanz) @joefresna Einat Couzin-Fuchs ( University of Konstanz, Konstanz ) @einatcouzin Ofer Feinermann ( Weizmann Institute of Sciences, Israel) @WeizmannScience Naama Brenner ( Israel Institute of Technology, Israel) @TechnionLive Ariana Strandburg-Peshkin ( Max Planck Institute of Animal Behavior , Konstanz) @ariSPeshkin Wataru Toyokawa (Riken Center for Brain Science in Tokyo). @WataruToyokawa Raphaela Heesen ( University of Konstanz, Konstanz) Caroline Schuppli ( Max Planck Institute of Animal Behavior , Konstanz) @carolschuppli Michael Chimento ( University of Konstanz, Konstanz) @evogom @CBehav @MPI_animalbehav @UniKonstanz

English
0
10
13
3.4K
Integrative Biophysics Group đã retweet
Ahmed El Hady
Ahmed El Hady@zamakany·
One of the main insights of our new paper is that when studying social patch foraging, it is crucial to look beyond patch residence time , looking into metrics characterizing the accuracy of inferring patch quality and group cohesion certainly increase our understanding of decision strategies. Check more here : arxiv.org/abs/2503.02794
Ahmed El Hady@zamakany

Our study suggests that although a widely used metric in foraging studies is patch residence time (a key variable in the Marginal Value Theorem ) accuracy of inferring patch quality and group cohesion may be of critical importance to characterize group patch foraging dynamics .

English
0
1
4
429
Integrative Biophysics Group
Integrative Biophysics Group@IntBioPhysics·
Check out the newest study from our group on how social hierarchy shapes foraging decision strategies
Ahmed El Hady@zamakany

Very excited for this new study with my very talented postdoc Lisa Blum Moyse ( @IntBioPhysics ) where we develop an analytically tractable model of how social hierarchy shapes foraging decisions, in a patch foraging context. @CBehav Social hierarchy can be modeled as a group of agents comprised of leaders and followers .Followers can interact with leaders in different ways, either follow leaders (as they leave or arrive to the patch ) or receive false information ( misinformation) through false belief sharing about reward or patch quality. We treated each of those case mathematically. thread/

English
0
0
0
136
Integrative Biophysics Group đã retweet
Ahmed El Hady
Ahmed El Hady@zamakany·
Check out this junior scientist workshop @HHMIJanelia that I am co-organising with @AllysonSgro and Magdalena Schneider on Theoretical Biophysics ( Application deadline: June 10th, 2025, website: janelia.org/you-janelia/co…) . Participants will include only students and postdocs working on a variety of problems in theoretical biophysics, broadly defined. Topics include but not limited to : · Physical principles underlying biological function in molecular, cellular, multicellular systems · Theory of organismal development · Theory of animal behavior, ecological systems, and evolutionary dynamics · Data driven identification of principles in biophysical systems · Physics of active matter · Non–equilibrium thermodynamics of living systems
Janelia Conferences@janeliaconf

Students + postdocs in theoretical biophysics 👉 Join us @HHMIJanelia in October to present your research, engage in lively discussions, and network with peers. ✈️ Hotel, meals, & travel covered Learn more + apply by June 10 @ janelia.news/THB25 @HHMINews @zamakany @AllysonSgro

English
0
2
9
1.2K