GATK Dev Team

As of May 1st 2025, GATK forums will be community-driven and self-moderated. They will not be moderated or monitored by a GATK team member. We encourage members of the community to continue to engage with each other on these forums. gatk.broadinstitute.org/hc/en-us/commu…

GATK 4.6 is out with some much-requested changes to no-call behavior, plus an important CRAM bug fix. Check out the release notes (github.com/broadinstitute…). This is definitely a recommended upgrade for all GATK users! #gatk

Using a deep generative model, CellBender models and denoises droplet-based single-cell data and improves multiple downstream analyses. @broadinstitute @patrick_ellinor @gatk_dev nature.com/articles/s4159…

Pretending to be a biologist this week - am learning so much in the @BioInfoCambs / @broadinstitute course on using the @gatk_dev for variant discovery 🧬

Parabricks 4.0 is FREE for R&D, and the team made prebuilt workflows in #wdl and #nextflow available: developer.nvidia.com/blog/democrati… . They're on @TerraBioApp (terra.bio/nvidias-clara-…), up to 24X faster, up to 2X cheaper, and publicly available on GitHub: github.com/clara-parabric…

Nvidia Clara Parabricks has accelerated #bwa, #gatk HaplotypeCaller, mutect2, DeepVariant, bam -> fastq, QC tools, functionally equivalent to community versions, up to _80X_ faster, FREE for R&D, + available with @nvidia AI Enterprise support: nvidia.com/en-us/clara/ge…

More like fresh new toke

Two hours of hands-on training tomorrow could save you two months of googling! Register now for our online interactive workshop on DRAGEN-GATK, the latest version of our open source Best Practices for whole genome analysis. gatk.broadinstitute.org/hc/en-us/artic…

Last chance to register for our interactive online workshop this Friday — Just 2 hours to learn the ins and outs of running the open source DRAGEN-GATK pipeline! gatk.broadinstitute.org/hc/en-us/artic…

Don't miss our interactive online workshop on DRAGEN-GATK this Friday, 10:30AM–12:30PM EST — Register today! gatk.broadinstitute.org/hc/en-us/artic…

@Trap33664920 If your question is fairly specific to GATK, you can ask in our support forum, where one of our support team members can help you. Others GATK users may also chime in. For more general questions & if you prefer Twitter, try the #bioinformatics Twitter community.

Our team is pulling out all the stops for this special interactive session on DRAGEN-GATK! Including making fan art… credit to Derek Caetano-Anolles twitter.com/gatk_dev/statu…

@bohan_ni Can you please post this in our current support forum? That way we can track your request with a support ticket and make sure you get the best help.

@gatk_dev is this console.cloud.google.com/storage/browse… still the right resource?

one of the chr15 is a catfish... (does anyone know the none corrupted 1000G SNP resources for GATK??)

📣 Don't miss these interactive online #bioinformatics workshops — smash that register button today! terra.bio/get-trained-on…

📣 New GATK release! 4.3.0.0 adds stable support for the @UltimaGenomics flow-based sequencing platform among other feature improvements. Release notes here: github.com/broadinstitute…

📣 New #GATK webinar! Learn how to do Whole-Genome Analysis with DRAGEN-GATK 🧬🧬🧬 October 21, 2022 from 10:30AM–12:30PM EST. Register today to get the zoom invite! #Bioinformatics #training #genomics gatk.broadinstitute.org/hc/en-us/artic…

Exciting to see hardware accelerated GATK workflows made available on @TerraBioApp so anyone can enjoy the huge speed boost and lower cost