Good news for Arch GNU/Linux users! Graph-tool is now available in the main repository! To install it, just do:
pacman -S python-graph-tool
The days of compiling graph-tool from AUR are over!
Rejoice! 🎉
English
graph-tool
30 posts
graph-tool
@graph_tool
graph-tool is an efficient Python module for manipulation and statistical analysis of graphs, implemented in C++. Also on 🐘 @[email protected]
Package manager near you. Tham gia Mart 2021
241 Đang theo dõi774 Người theo dõi
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Hello world! We're a research group led by @tiagopeixoto at the newly founded IT:U, Linz, Austria.
We focus on inverse problems in network science and complex systems.
Follow this account to get scientific updates!
skewed.de/tiago
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Did you know that you install @graph_tool via @condaproject, it will install binaries that are
optimized for your specific CPU micro-architecture, including SIMD vectorization, in addition to having OpenMP enabled?
It's awesome! Try it out today!
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Good news everyone! A new version of graph-tool is just out! @graph_tool
graph-tool.skewed.de
@graph_tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N
English
Hummm, faudrait test ca :x
Tiago Peixoto@tiagopeixoto
Good news everyone! A new version of graph-tool is just out! @graph_tool graph-tool.skewed.de @graph_tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N
Français
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Applying Bayesian generative stochastic block modelling to the molecular data of individual patient lesions, we reveal a hierarchical network structure of tumour genetics.
Powered by @tiagopeixoto's @graph_tool: check it out for your research.
3/6 🧵
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@graph_tool does this! graph-tool.skewed.de/static/doc/aut…
George Richardson@g_r_richardson
This could open a can of worms but... should libraries that offer modularity maximisation methods issue a health warning when the relevant functions are imported? Or maybe just a note in the docs would do the same without bringing scientific debate to the command line
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@graph_tool's documentation has just gotten a facelift!
Besides an overall re-organization, now there's a new and improved quick start guide.
Check it out and tell your friends!
graph-tool.skewed.de/static/doc/ind…
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Did you know that you can easily use @graph_tool with @SingularityApp?
Singularity/Apptainer lets you run containers in HPC clusters *as a regular user*.
This means you do not have to ask your sysadmin to install software for you!
Easy instructions: #installing-using-apptainersingularity-useful-for-hpc-systems" target="_blank" rel="nofollow noopener">git.skewed.de/count0/graph-t…
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@moeslim_roni @graph_tool @SingularityApp It's often ~200x faster, does better visualization (IMO), and contains many different algorithms, including inferential community detection.
graph-tool.skewed.de/performance
graph-tool.skewed.de/static/doc/dem…
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GIF
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Ejemplo de herramientas para visualizar redes
Dr. Verónica Espinoza@Verukita1
Hello everyone, I share with you some networks that I have made in different tools for network analysis. I highly recommend these tools. Greetings. #Gephi #Gephisto #VosViewer #Cytoscape #Kumu #GraphInsight #NodeXL #orangedatamining #Graphia #Graphistry #SocNetV #Tulip #dataviz
Español
@tiagopeixoto @graphtool Awesome! I wonder, could it be useful to visually portray neural networks?
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Good news everyone! A new version of graph-tool is just out! @graphtool
graph-tool.skewed.de
Single line installation:
Anaconda ⤵️
conda create --name gt -c conda-forge graph-tool
Homebrew ⤵️
brew install graph-tool
Debian/Ubuntu⤵️
apt-get install python3-graph-tool
1/2
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I've moved the @graphtool mailing list to a discourse forum at forum.skewed.de/c/graph-tool
The interface is a bit more friendly to many, but it is still possible to interact with it via email, much like a mailing list.
The whole archive has been mirrored there as well.
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@Moritz_Laber Please open an issue with the problem in the website, and it will be investigated!
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Has someone used @graphtool before to draw a network on top of a map?
I used to do this with networkx+basemap but the same pipeline (passing meractor projection as pos and the map as mplfig) does not work for me in graph-tool.
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What's the best network visualization library for Python?
I am looking for something as good as ggplot's visNetwork (like the image below), but so far I didn't have any luck 😒. I've made something using pyvis, but it's still not as good
#dataviz #DataScience
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Do you want to study the rich US faculty hiring dataset just published with the paper below by @hneutr, @_szhang, @aaronclauset and @DanLarremore ?
It's now also on @netzschleuder on several formats, and can be easily loaded into @graphtool!
See: networks.skewed.de/net/faculty_hi…
Hunter Wapman@hneutr
1/ New paper! nature.com/articles/s4158… with @_szhang @aaronclauset @DanLarremore. 🎓 We analyzed all 295K tenure-track faculty at US PhD-granting universities in 10,612 departments over 10 years to quantify hierarchy and dynamics in US faculty hiring and retention. 🦥 A summary:
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Good news everyone! A new version of graph-tool is just out! @graphtool
graph-tool.skewed.de
Single line installation:
anaconda ⤵️
conda create --name gt -c conda-forge graph-tool
homebrew ⤵️
brew install graph-tool
debian/ubuntu⤵️
apt-get install python3-graph-tool
English
A new year, a new version of graph-tool is out!! @graphtool
graph-tool.skewed.de
Single line installation:
anaconda ⤵️
conda create --name gt -c conda-forge graph-tool
homebrew ⤵️
brew install graph-tool
debian/ubuntu⤵️
apt-get install python3-graph-tool
English