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⚡️ “Allen Mouse Brain Common Coordinate Framework - Gallery”
twitter.com/i/moments/1371…
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Lydia Ng
1K posts
After 20+ years at @AllenInstitute, I’m retiring. It’s been a privilege to have work alongside so many wonderful scientists, engineers, technicians, PMs and support staff in the pursuit of understanding the brain and sharing data and knowledge with the world.
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Lydia Ng أُعيد تغريده
The data involved with this research is freely available to accelerate research and discovery. Browse the SEA-AD Brain Cell Atlas, made possible by a @NIHAging-funded collab with @UWMedicine & @KPWaResearch.
🔗 portal.brain-map.org/explore/seattl…
#studyBRAIN
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Lydia Ng أُعيد تغريده
The study, published today in @NatureNeuro, involved over 3.4 million cells from 84 brains. Donors ranged from those with advanced Alzheimer’s dementia to unimpaired subjects without evidence of AD.
#studyBRAIN nature.com/articles/s4159…
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Lydia Ng أُعيد تغريده
📣NEXT WEEK! Join us @AllenInstitute for a night of storytelling that take you behind the scenes of Allen Institute science with @han_arbach, Ashwin Bhandiwad, Max DePartee, Rachel Hostetler & Rachel A McCue. 🎟️ Livestream & in-person tickets: ow.ly/skvC50Tannm
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Sharing🤯video to get you through Friday!
Credit: @E_cross_B
@Blender animation of the Allen Mouse Common Coordinate Framework (#CCF). Outer structures "explodes" out to reveal inner brain structures.
@AllenInstitute
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Lydia Ng أُعيد تغريده
We've begun rolling out anatomical annotations to the Allen Brain Cell Atlas!
The first data set to support these annotations is the MERFISH Spatial Transcriptomics Dataset of a Single Adult Mouse Brain - registered to CCFv3. 🔗 #AQEBWkkzUlIwRlhMM0hZWEdWRTJTNQACRllZNE9NMkxVNUowWU9GMDdEUgADAQEyTlFUSUU3VEFNUDhQUUFITzRQAAIBQzU3Qkw2Si02Mzg4NTAuNTQAAAQBAAKEpj0EgVyx0wOBCKuDgW6LTwQyTlFUSUU3VEFNUDhQUUFITzRQAAWBr6ZKgemsDoGggUeAktXoBgAHAAAFAAYBAQJGUzAwRFhWMFQ5UjFYOUZKNFFFAAN%2BAAAABAAACDRTVENTWkJYSFlPSTBKVVVBM00ACUxWREJKQVc4Qkk1WVNTMVFVQkcACgALAVRMT0tXQ0w5NVJVMDNEOVBFVEcAAjczR1ZURFhERUdFMjdNMlhKTVQAAwEEAQACIzAwMDAwMAADyAEABQEBAiMwMDAwMDAAA8gBAAAAAgEA" target="_blank" rel="nofollow noopener">knowledge.brain-map.org/abcatlas#AQEBW…
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Lydia Ng أُعيد تغريده
Whole, healthy human brain data is now on the ABC Atlas!
Dataset incl. 3 million+ cells sampled from dissections from adult donors. Samples underwent snRNA sequencing and were clustered and categorized by neurotransmitter, region, and more.
ABC Atlas: portal.brain-map.org/atlases-and-da…
GIF
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Lydia Ng أُعيد تغريده
⭐New data are available on the Allen Brain Cell (ABC) Atlas
The ABC Atlas provides a platform for visualizing multimodal single cell data across multiple whole-brain datasets simultaneously. #OpenScienceWeek. Visit: portal.brain-map.org/atlases-and-da…
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We are delighted to be working with @awscloud and #BRAINInitiative to create first of its kind cell types knowledge base spanning modalities, species and developmental stages and making these resources available to the research community! @AllenInstitute #studyBRAIN
Adam Selipsky@aselipsky
With @awscloud, the @AllenInstitute is mapping the whole human brain and creating the largest open-source brain cell database in the world. The team is looking to leverage generative AI services like Amazon Bedrock to integrate foundation models into this first-of-its-kind platform to advance treatment for brain disorders. A true example of how #AI and #ML will change lives for the better. aboutamazon.com/news/aws/how-s…
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Congratulations @HongkuiZeng!
Allen Institute@AllenInstitute
Congrats to our own @HongkuiZeng on being elected to @theNASciences! She was chosen for her contributions to society's understanding of mammalian brain cells and connections, and leading the development of #OpenScience data and tools. alleninstitute.org/news/hongkui-z…
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Lydia Ng أُعيد تغريده
On this day in 2014, we published the Allen Mouse Brain Connectivity Atlas, the first comprehensive, large-scale data set on how the brain of a mammal is wired. #Allen20
Learn more: reuters.com/article/us-sci…
#NeuroTwitter
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Lydia Ng أُعيد تغريده
the only people I’ve seen dismissing this insightful article are ones who don’t seem to understand compression very well
the only surprise(?) is that it took a skilled writer and thinker, instead of one of us researchers, to make the case crystal clear
newyorker.com/tech/annals-of…
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@_JakeVogel_ @AllenInstitute The figure itself is an svg asset. I would like to extract that out and put it on the @AllenInstitute github so you will have source origin to reference
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So glad that our cute little human brain schematic is finding reuse after all this time @AllenInstitute #openscience
Jake Vogel@_JakeVogel_
‼️New preprint‼️ medrxiv.org/content/10.110… Disease progression modeling of: * 3⃣ TDP-43 proteinopathies (ALS, FTLD-TDP, LATE-NC) * Postmortem TDP-43 data from 22 🧠 regions * N = 571 donors We set out to create order from the progression patterns of these 3 proteinopathies? 1/13
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