Stanford Plevritis Lab

Wendy Yang in the lab reviewed the existing ML methods (prediction & interpretation) for predicting 3D genome features using DNA sequences. This will be in a Special Issue @JMolBiol on AI/ML for mol bio edited by @james_y_zou @PlevritisLab @Hongzhe_K_Lee. sciencedirect.com/science/articl…

This work was spearheaded by Dr. Weiruo Zhang, along with @irenoplasm @RetickerFlynn @GoodZinaida and advised by @Qle_stanford @askyperson @JohnSunwooMD @GarryPNolan

We're excited to share the final version of the CELESTA paper - a new method to identify cell types in multiplexed imaging! CELESTA is available on github: github.com/plevritis-lab/…

Tumors spread to lymph nodes before they metastasize to distant tissues, but for over a century scientists have debated whether this matters. It does. Check out our paper online now @CellCellPress @CellPressNews cell.com/cell/fulltext/… 1/15

...but this work could not be possible without our interdisciplinary team at @StanfordMed: Yuanyuan Li, @irenoplasm, Michael Ozawa, @christineyyeh, @aechiou, Winston Trope, Jonathan Taylor, Joseph Shrager, @PlevritisLab

This work was spearheaded by the phenomenal @aliceomics as her graduate work in @StanfordDBDS and @stanfordbmi...

Cellular crosstalk is fundamental to tissue biology. We are very excited to share our novel computational method - REMI - for reconstructing cell-cell communication from omics data! Read the article here: science.org/doi/10.1126/sc…

What a great panel with these rockstars highlighting the importance of mentorship, diversity, and team science!! #WiDS2022 Data Science in Healthcare: Opportunities & Challenges ⁦@PlevritisLab⁩ @tanveersyedama1 ⁦@JYazdanyMD⁩

Excited to hosting my mentor Dr Sylvia Plevritis from @PlevritisLab @StanfordDBDS at this week's Cancer Prevention & Control Grand Rounds @MDAndersonNews. Join us to learn from a renowned expert how simulation models can offer insights on cancer biology & outcomes. Can't wait!

New results from the @PlevritisLab now available in "Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA reveals novel spatial biology!" #CancerResearch #DataScience biorxiv.org/content/10.110…

@irenoplasm @RetickerFlynn @GarryPNolan @askyperson @Qle_stanford @JohnSunwooMD Supported by @StanfordDBDS @stanfordcbio @StanfordPath @StanfordRad @StanfordCancer @NCIResearchCtr - please like and RT!

Using CELESTA, we ID'd novel tissue morphology specific to lymph node metastasis in head and neck cancers. This project was pioneered by Dr. Weiruo Zhang + support from @irenoplasm @RetickerFlynn @GarryPNolan @askyperson @Qle_stanford @JohnSunwooMD biorxiv.org/content/10.110…

We're excited to announce CELESTA, an algorithm that identifies cell types in multiplexed images! Read the preprint: biorxiv.org/content/10.110…

The new CCAIM Seminar Series, bringing you the world leaders in #AI and #ML for healthcare, kicks off on 10 Feb 2021. Each free online seminar is followed by a live Q&A with our distinguished speaker. Find out more, and sign up bit.ly/2KwIWmc

Announcing our newest work on spatial fibroblast heterogeneity and #glycosylation, out now in @CR_AACR and led by Dr. Gina Bouchard @Gina78593734! cancerres.aacrjournals.org/content/early/…

Are you a cancer researcher and interested in an editorial career? We have a job opening for 2022. If you have experience in pre-clinical or clinical CANCER RESEARCH we'd love to hear from you! go.nature.com/3dVKYro @katieridd for questions! #CancerResearch @NatResCancer

Please RT: faculty position at Stanford! PhD, MD, MD/PhD candidates in the broadly-defined fields of pediatric cancer or stem cell transplant, laboratory and/or computational research programs welcome. Amazing environment! Feel free to contact me + check: app.smartsheet.com/b/form/ac9a220…

Preparations are underway for the 2022 Special Issue "Machine learning and AI for molecular biology" guest edited by @james_y_zou and @PlevritisLab @stanford and @Hongzhe_K_Lee @PennMedicine! See the detailed call for research articles at the link below bit.ly/3v9a9hX