Susana MartinezArbas

An illustrated introduction to the autocorrelation function, with monster generations 👾💙🩵 🧵1/9

The promise of phages Phage therapy is an exciting alternative to antibiotics. Why now? go.nature.com/3poKjb1

Here is my method to conduct (and automate) a literature review. Using Google Scholar, @scite , @litmaps , #ChatGPT, @zotero and @obsdmd. Tutorial with examples and best practices: 👇

Ever wonder about Life on a Leaf? Love some #metaT & #metaG with a little bit o' #timeseries sprinkled on top? New pub! Seasonal activities of leaf #microbiome rdcu.be/c6fEb @GLBioenergy @CABBIbio @teeniedeenie @nejcstopno @MSU_MMG @MSU_PRI @EMG_Lyon @ecomicrolyon

Do you know somebody who wants to pursue their #PhD at our Centre of Omics-Driven Computational Biodiscoverv (#COMBIO) at @AIMSTUNIVERSITY in Malaysia within #rainforest #biodiversity? #jobalert #phdposition

Need a #virus or #phage bioinformatics tool? Have a #virus or #phage bioinformatics tool? Check out this google sheet and add your new tools docs.google.com/spreadsheets/d…

aweMAGs: a fully automated workflow for quality assessment and annotation of eukaryotic genomes from metagenomes biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

New lab preprint: We have a new wrapper 'ViWrap' to enable viromics and viral ecology studies. Software freely available on github. Feedback welcome. biorxiv.org/content/10.110…

After years of methodological research, linear regression takes the cake yet again (which somewhat agrees with our 2021 @PLOSCompBiol paper: lnkd.in/ehDxW_NB) Moral of the story: 'Simplicity is the ultimate sophistication' 🙂 Link: lnkd.in/eUCJqJKP

Comparing scientific abstracts generated by ChatGPT to original abstracts using an artificial intelligence output detector, plagiarism detector, and blinded human reviewers biorxiv.org/content/10.110…

Our latest curiosity driven observation article @mSphereJ We report differences in the species contributing to key gut functions & redundancy in Dutch individuals with different dietary habits @SFuentes_Micro & and collaborators @rivm & @UMCUtrecht journals.asm.org/doi/10.1128/ms…

@ppgardne @emmabell42 De.z zzz CCSS

@emmabell42 Damn right!

If you're a programmer, these 10 git commands will save you hours of research🧵👇

binny: an automated binning algorithm to recover high-quality genomes from complex #metagenomics datasets biorxiv.org/content/10.110… github.com/a-h-b/binny/

Today's #rstats cheatsheet: git-github Download: raw.githubusercontent.com/rstudio/cheats… See more: rstudio.com/resources/chea… Contribute your own: github.com/rstudio/cheats…

🎉 New tutorial 🎉 Ever wanted to go from raw metagenome reads to a handy taxonomic table like the ones in phyloseq or speedyseq? Sourmash gather & sourmash tax get you there quickly and accurately 🏃‍♀️ 💯 taylorreiter.github.io/2022-07-28-Fro…

Any RNA #phage fans around? Then you might not want to miss our August #virusesinsilico lecture. Simon Roux @simroux_virus will be speaking about an unprecedented and so-far-uncharacterized richness of #RNAphages. Registration is free: evbc.uni-jena.de/events/viruses…

Mining of Thousands of Prokaryotic Genomes Reveals High Abundance of Prophages with a Strictly Narrow Host Range @mSystemsJ by @GamaLopLeal et al journals.asm.org/doi/10.1128/ms…

📢 Attention RSG leaders: RSG committee has announced the third call of the RSG funding program. Send your applications by 15th of August! Make sure to check the announcement on the Basecamp project for more details. For queries, contact rsg-chair@iscbsc.org :)