

COSEM
24 posts

@COSEMdata
Using machine learning and computer vision techniques to automatically identify and quantify all intracellular substructures & organelles in isotropic EM data












We are proud to share our work on segmenting up to 35 organelles & macromolecular structures in whole cell isotropic FIB-SEM at 4 & 8nm resolution biorxiv.org/content/10.110… 1/12

It’s official! Our manuscript is out today in @Nature. 🥳 Additions since our preprint include a comparison of generalists trained on all training data vs specialists trained on subsets (spoiler alert: generalists win!) and #moreGolgi! rdcu.be/cy1UJ (1/3)

Final session of @bengurionu data science in cell imaging course! Course summary and @OpenCellCZB, @OpenOrganelle, and @AllenInstitute public resources Slides are up assafzar.wixsite.com/dsci2021/lectu…, ping me for recordings! Still curious to see how students' projects will turn out :-)

@romainGuiet @fabrice_senger @waisman_ar @Gonza_Saba @uschmidt83 @jytinevez @FijiSc You might also consider using the free version of syGlass. syglass.io/view It's significantly better with a VR headset, but the rendering is so choice. [Data credit to @COSEMdata ]













