Arindam Roy

Had an enriching experience on understanding applications of stable isotopes in deciphering ecosystem processes at BaySISS 2024. Thanks @BioGeoMicrOcean @bay_ceer @unibt organising summer school and @dfg_public for generous travel grant @BhadPunyasloke @ITMERG1

📊 Rethinking microbial #biogeography in lakes No latitudinal diversity gradient in sediment bacteria. Carbon resources #DOM regulate diversity, life-history strategies, networks. ➡️ Resource partitioning, not Red Queen Molecular Ecology @molecology doi.org/10.1111/mec.70…

PhaGCN_Cluster: A Scalable and Robust Framework for Automated Classification and Discovery of Viral Dark Matter from Metagenomes | Interdisciplinary Sciences: Computational Life Sciences | Springer Nature Link link.springer.com/article/10.100…

Microbiome Datahub: an open-access platform integrating environmental metadata, taxonomy, and functional annotation for comprehensive metagenome-assembled genome datasets | Microbiome | Springer Nature Link link.springer.com/article/10.118…

Writing is thinking

Metagenomic survey across Indian cities reveals widespread, mobile resistance and a large reservoir of unknown microbes nature.com/articles/d4415…

Carbon, nitrogen, and sulfur cycling unveil deep-sea microbial niches in the Atacama Trench | Nature Communications nature.com/articles/s4146…

Environmental quality affects the formation of generalist and specialist taxa in microbial communities academic.oup.com/ismecommun/adv…

Editor's Choice: Infrared spectroscopy prediction of soil microbial properties across Australian soils: Drivers and limitations #Soilhealth #PredictionMarkets @soileh2023 @ElsevierConnect sciencedirect.com/science/articl…

Coastal Vibrio as a source of antimicrobial resistance?: Trends in Microbiology cell.com/trends/microbi…

Genomic and metagenomic survey of microbial carbonic anhydrase genes reveals novel clades, high diversity, and biome-specificity academic.oup.com/ismecommun/adv…

@protasov_evgeni @ISMEJournal MTBs are so fascinating

Giant multicellular magnetotactic prokaryotes in marine sediments #microbiology #prokaryotes @ISMEJournal doi.org/10.1093/ismejo…

Quantitative assessment of modern #pollen analogue from Majuli Island, Northeast #India: insights into vegetation–climate dynamics and human impact.  #BSIP #research DOI: doi.org/10.1007/s10661… @IndiaDST @DrJitendraSingh @karandi65

Molecular composition determines the nitrogen isotopic signatures of dissolved organic matter #stableisotopes sciencedirect.com/science/articl…

The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems sciencedirect.com/science/articl… #microbiome

Microbially enhanced dissolution of calcite in sinking marine particles pnas.org/doi/abs/10.107…

Seasonal patterns of DOM molecules are linked to microbial functions in the oligotrophic ocean journals.asm.org/doi/10.1128/ms…

High-quality metagenome assembly from nanopore reads with nanoMDBG | Nature Communications nature.com/articles/s4146…

Finally

Dissolved organic matter specialisation drives temporal dynamics of simplified bacterial communities in a microcosm experiment academic.oup.com/ismecommun/adv…

Nanopore sequencing reaches amplicon sequence variant (ASV) resolution biorxiv.org/content/10.648…