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Bilkent CompGen
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Bilkent CompGen
@BilkentCompGen
Alkan Lab for Bioinformatics and Computational Genomics at @CS_Bilkent
Ankara, Turkey 가입일 Haziran 2013
223 팔로잉630 팔로워
Bilkent CompGen 리트윗함
@BilkentCompGen
DATE: August 27, Wednesday @ 14:00 Place: EA 409
M.S.THESIS PRESENTATION
Using Bloom filters to quickly and efficiently characterize genomic repeats and segmental duplications
Klea Zambaku
Master Student
(Supervisor: Assoc.Prof.Can Alkan)
English
Bilkent CompGen 리트윗함
@BilkentCompGen
M.S.THESIS PRESENTATION
Efficient variation graph construction using Locally Consistent Parsing
Akmuhammet Ashyralyyev
(Supervisor: Assoc.Prof.Can Alkan)
English
Bilkent CompGen 리트윗함
Congratulations to my former MSc student and forever collaborator @FirtinaC for joining @umdcs as Assistant Professor.
UMD Department of Computer Science@umdcs
📢 @umdcs is welcoming 8 new faculty in 2025–26 with expertise in AI policy, robotics, bioinformatics, vision, language models, simulation & sound design. They’ll strengthen research & teaching across computing. Read more: go.umd.edu/New-Faculty7-2…
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Bilkent CompGen 리트윗함
Our consortium-wide position paper is now available as a preprint @arxiv arxiv.org/abs/2506.00597 @SAFARI_ETH_CMU @UPMEM @IBMResearch @RayanChikhi @institutpasteur @BarIlanU @CNRS
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. @BilkentCompGen alumnus @mealser is now an Assistant Professor at the @GeorgiaStateU, and he is hiring. Spread the news!
Mohammed Alser@mealser
📢 I am hiring 2 researchers and 3 PhD students 🧑🎓👩🎓 @GeorgiaStateU 🇺🇸🇪🇸 Simple Application: CV & Tell us why you are the best candidate 🤩💪 Share & Apply ➡️: alserlab.github.io #Bioinformatics #omics #microbiome #computationalbiology #postdoc #PhD #Research #recomb
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We are at the beautiful @wellcometrust @sangerinstitute @emblebi campus! We presented our work in hardware/algorithm co-design to accelerate bioinformatics workloads at the #genomeinformatics24 workshop. Big thanks to @eventsWCS for a well-organized meeting.
BioPIM Project@ProjectBioPIM
Last day of #genomeinformatics24! We have presented our work in @ProjectBioPIM with talks from @calkan_cs and @camiladuitama1 and a poster by @zulal_b, increasing the awareness of hardware acceleration in the community.
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Bilkent CompGen 리트윗함
We are at the Genome Informatics 2024 meeting with two talks and a poster. @calkan_cs @zulal_b @camiladuitama1 @RayanChikhi in attendance.
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Bilkent CompGen 리트윗함
We held our third plenary meeting for the BioPIM Project in beautiful Zurich, marking the close of our second review period. Since our last meeting in May, we have published three additional papers, with several more submitted and available as preprints.
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AirLift aims to quickly remap a read set previously mapped to a reference genome to another reference genome version and provides 27.2x speed up compared to full remap from scratch.
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AirLift algorithm by #JeremieKim, @FirtinaC @banu_cavlak @damlasenolcali @mealser @NHajinazar @calkan_cs @_onurmutlu_ / @SAFARI_ETH_CMU is now published in IEEE Transactions on Computational Biology and Bioinformatics: ieeexplore.ieee.org/document/10638…
Bilkent CompGen@BilkentCompGen
New preprint in collab with @SAFARI_ETH_CMU "AirLift: A Fast and Comprehensive Technique for Translating Alignments between Reference Genomes", by #JeremieKim @FirtinaC @damlasenolcali @mealser @NHajinazar arxiv.org/abs/1912.08735
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Bilkent CompGen 리트윗함
The Genome Informatics 2024 Meeting will be hosted on the Wellcome Genome Campus @eventsWCS in Hinxton, UK, November 13-15, 2024. @calkan_cs will give an invited talk to feature hardware acceleration of bioinformatics workloads and the BioPIM Project.
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We are glad to attend the @UCLA_CGSI in Los Angeles. In the first two weeks Klea and Ricardo presented their work. One more week to go, but we are already looking forward to joining CGSI 2025!
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We are at the @UCLA_CGSI. Can presented @ProjectBioPIM, and Klea presented her project. We also met the leaders in bioinformatics, and one of our alumni, @mealser.
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Bilkent CompGen 리트윗함
New paper alert! GateKeeper-GPU is now published at IEEE Transactions on Computers, by @zulal_b, @mealser, @_onurmutlu_ , Özcan Öztürk and @calkan_cs. Early access: ieeexplore.ieee.org/document/10436…, arXiv version: arxiv.org/abs/2103.14978
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