Moritz S Schmid

NEW Disentangling plankton community structure on the OR and CA coast using gene sequencing and plankton imaging #DeepLearning #BigData @OSUPlanktonLab @HatfieldMSC @OSUIB @OSUCEOAS @OSUScience @MSI_OregonState @SutherlandLab @bluewaterlab @FrontMarineSci tinyurl.com/2hwwh5mb

@OSUPlanktonLab @HatfieldMSC @OSUIB @OSUCEOAS @OSUScience @MSI_OregonState @SutherlandLab @bluewaterlab @FrontMarineSci Thanks to many collaborators out there who made this possible! Including Chris Sullivan @CQLSOregonState and @AvenaBriseno @kelsey_swieca. Major funding by @NSF and processing at @ACCESSforCI and formerly XSEDE with @SDSC_UCSD

NEW Disentangling plankton community structure on the OR and CA coast using gene sequencing and plankton imaging #DeepLearning #BigData @OSUPlanktonLab @HatfieldMSC @OSUIB @OSUCEOAS @OSUScience @MSI_OregonState @SutherlandLab @bluewaterlab @FrontMarineSci tinyurl.com/2hwwh5mb

@LodewijkW @OSUPlanktonLab @HatfieldMSC @MSI_OregonState @OregonState @OSUScience @OSUCEOAS @OSUIB @ResearchOSU @NSF @FrontMarineSci @westerndigital Thanks man! Hope you are doing well and exciting stuff!

Neat new paper out with @OSUPlanktonLab Edge computing at sea: high-throughput classification of in-situ plankton imagery for adaptive sampling #plankton #EdgeComputing #MachineLearning #oceanography #oceantechnology frontiersin.org/articles/10.33… Researchgate: beav.es/Twz

@OSUPlanktonLab @HatfieldMSC @MSI_OregonState @OregonState @OSUScience @OSUCEOAS @OSUIB @ResearchOSU @NSF @FrontMarineSci @westerndigital WD wrote a blog article a while ago that you might find informative: blog.westerndigital.com/edge-computing…

@OSUPlanktonLab @HatfieldMSC @MSI_OregonState @OregonState @OSUScience @OSUCEOAS @OSUIB @ResearchOSU @NSF @FrontMarineSci @westerndigital Through industry collaboration with Bellamare LLC and @westerndigital we show how oceanographic sampling can be improved and made adaptive/dynamic based on real time IDs of plankton including copepods, jellies, and larval fish right on the ship using #AI.

Future is mixotrophy in world ocean! Read about it doi.org/10.1093/plankt…

New paper with @AdamTGreer & @OSUPlanktonLab on imaging doliolids ("jellyfish") using the ISIIS underwater imager across multiple ecological systems. Great teamwork! @HatfieldMSC @OSUCEOAS @OSUIB @AvenaBriseno @jessicayluo @KellyRobinson0 @OSUScience

Congratulations to the Plankton Ecology labs newest doctor, Dr. Megan Wilson!

Undergraduate REU intern @MegAlberding spent the summer with the Plankton Ecology lab, analyzing ISIIS data on chaetognath distributions, and joining us in our summer cruise. Yesterday she presented a poster at the @HatfieldMSC summer symposium. Thanks for the fun summer Meg!

The Plankton Ecology Lab at Oregon State University has received their new #LISST-200X which they will use with the In-situ Ichthyoplankton Imaging System to investigate plankton size spectra on the Oregon Shelf. Read more here: bit.ly/3ACPaai #OceanSci #Plankton

Stomatopod (aka mantis shrimp) larva from the South Atlantic Bight - the adults have up to 16 visual pigments (we only have 4). Who knows what this little one sees, but it develops some of the most amazing eyes in the animal world!

@aslo_org @RenatoQuinones @OregonState @GMRI @udeconcepcion If your work touches on the size structure of oceans in any way, please check out the abstract at the link above. We invite work ranging from theory to applications, including new observational techniques, ecosystem indicators, and more!

Colleagues, we invite you to submit to our @aslo_org #OSM22 session: ME02 The size structure of #aquatic #ecosystems: from theory to applications. Chaired with Maria Grigoratou and @RenatoQuinones. Find the abstract: aslo.org/osm2022/scient… @OregonState @GMRI @udeconcepcion

Dynamic mesoscale and submesoscale oceanographic features increase foraging opportunities for one of the world's smallest seabirds. New study by Federico De Pascalis and colleagues: bit.ly/meps_668_121

Check our newest blog for our #citizenscientists @the_zooniverse @PlanktonPortal where we report on on a @NOAA cruise on Bell M. Shimada. Lots of info on the #NorthernCaliforniaCurrent and its #plankton. Funded by @NOAA @NASA @NSF @Belmont_Forum Questions? tinyurl.com/68awd5fs

Hey @ZENODO_ORG I should have tagged you earlier, but would you mind tweeting this out. The #plankton #imaging community would be very happy, and the product is quite well received on your webpage as well. Thanks!

Code is streamlined to set up the pipeline on your local #HPC as well as @NSF's @XSEDEscience. We provide a training library and test data. This is possible through a great collaboration with @CGRBOregonState. @OregonState @ResearchOSU @MSI_OregonState @OSUScience

After a lot of work, @OSUPlanktonLab is happy to open-source its processing pipeline for classifying billions of #plankton images using #DeepLearning #BigData dx.doi.org/10.5281/zenodo… Lot's of work went into this, thanks to @AvenaBriseno @jessicayluo et al. @HatfieldMSC @OSUCEOAS

Check out our latest features including a more seamless upload process and better support for software and supplementary information with @zenodo_org: blog.datadryad.org/2021/05/13/dry…

@MIZ_BIOS @NSF @XSEDEscience @CGRBOregonState @OregonState @ResearchOSU @MSI_OregonState @OSUScience Jean-Olivier Irisson of Ecotaxa is the lead PI. See also here for more info: hmsc.oregonstate.edu/planktonlab/re…

@MIZ_BIOS @NSF @XSEDEscience @CGRBOregonState @OregonState @ResearchOSU @MSI_OregonState @OSUScience Hi, we are actively working with the Ecotaxa folks on such things, yes. In fact we are funded by Belmont Forum and @NSF in a project called wPIC belmontforum.org/projects/world… We work on a bunch of things, but basically on aligning the efforts of imaging laboratories over the world.