Nick Semenkovich, MD PhD

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Nick Semenkovich, MD PhD

Nick Semenkovich, MD PhD

@semenko

Dad⁴. Founding member of @MedicalCollege Data Science Institute, focused on liquid biopsies / AI x Bio. Via @MIT ⨉ @WashU ⨉ @MassGenBrigham

Milwaukee 가입일 Kasım 2008
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Nick Semenkovich, MD PhD
@tallphil Love this!! Would love to get involved. Played with something similar first in python with RSeQC: github.com/semenko/rseqc-… High test coverage also exposes some cool edge case bugs like a longstanding error in soft clipping: #620--2026-03-19" target="_blank" rel="nofollow noopener">github.com/semenko/rseqc-…
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Phil Ewels
Phil Ewels@tallphil·
Super excited to be launching two things today: #RustQC 🦀🧬 and rewrites.bio 🚀 I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵 seqeralabs.github.io/RustQC/
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Pradheep J. Shanker, M.D.
Pradheep J. Shanker, M.D.@neoavatara·
What's funny is lot of American grads don't even take step 2 before they apply for residency.
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Francis Deng, MD
Francis Deng, MD@francisdeng·
@mahesh_shenai @sfgreen16521 @semenko Different industries have different staffing logistical needs so different labor markets make sense. The NFL has a draft. Uber and Lyft have phone apps. Economics has a scramble. Ophtho has SF Match. Urology has AUA match. Pharmacy, psychology, dentistry have matches, too.
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Francis Deng, MD
Francis Deng, MD@francisdeng·
The bias in this report is bad news for GME. A consolidated residency match gives a pro-competitive, fair, and coordinated market to place applicants into programs, optimizing for everyone's preferences so that pairings are stable. Also, the couples match is humane.
House Judiciary GOP 🇺🇸🇺🇸🇺🇸@JudiciaryGOP

#BREAKING: New Report Exposes How Medical Residency Hiring Monopoly Harms Patients and Doctors Newly obtained documents reveal how the Match placement system for resident physicians operates as a monopoly in the medical residency hiring market. Its monopolistic practices harm resident physicians, impede patients' access to care, and constrain the growth of America's physician workforce. A special-interest antitrust exemption currently shields the Match’s anticompetitive conduct from scrutiny, allowing it to harm the public while avoiding judicial oversight. Read the full report here: judiciary.house.gov/sites/evo-subs…

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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
The #Match2026 should 💯% be reformed, along with the mess of GME that frequently exploits trainees.
House Judiciary GOP 🇺🇸🇺🇸🇺🇸@JudiciaryGOP

#BREAKING: New Report Exposes How Medical Residency Hiring Monopoly Harms Patients and Doctors Newly obtained documents reveal how the Match placement system for resident physicians operates as a monopoly in the medical residency hiring market. Its monopolistic practices harm resident physicians, impede patients' access to care, and constrain the growth of America's physician workforce. A special-interest antitrust exemption currently shields the Match’s anticompetitive conduct from scrutiny, allowing it to harm the public while avoiding judicial oversight. Read the full report here: judiciary.house.gov/sites/evo-subs…

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alex rubinsteyn
alex rubinsteyn@iskander·
Giraffe saliva cures headaches! (…in combination with ibuprofen…) Chanting this AI generates mantra promotes weight loss! (…single arm study participants also took semaglutide…) Do you get the problem?
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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
I'm very sympathetic to that and deal with it sometimes. I encourage those to join a trial when possible (it frequently is!) / compassionate use of early stage drugs. Many folks are also tragically exploited and spend their last days (and dollars) on snake oil. (Even Steve Jobs did!)
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Aykut Uz
Aykut Uz@aykutuz·
@semenko @biogerontology Patrick claims "it is easy to eradicate cancer cells" [in 1. mice without toxicity; and 2. in humans too, despite toxicity -bc we couldn't do enough trials] . What we are saying is, people at their death beds should be given a chance of having their shots, if they want.
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Jiankui they/them
Jiankui they/them@IC50_cent·
Very techbro of the dog guy to sequence and use alphafold to find a bespoke therapy for a cancer that is almost unilaterally driven by KIT which has multiple approved inhibitors
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Jiankui they/them
Jiankui they/them@IC50_cent·
@pemulisking 50% chance this guy tries to raise money for a AI platform mRNA startup and this all some publicity stunt
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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
They … don't though, at least not yet? I'm optimistic! [And I'm predominantly CS too! :) ] We research this all the time. Billions flowing into custom / tailored mRNA neoantigen vaccines. Tons of promise & hope! I'm just not sure this piece (which I'm skeptical is fundraising for a future dog drug company) helps - hits the usual "regulators are the reason you die of cancer" trope.
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Aykut Uz
Aykut Uz@aykutuz·
@semenko @biogerontology I think nobody claims that this was a perfect scientific study, for that was not the motive. People, - including myself-, didn't know that we have tools at our disposal that would meaningfully increase our chances of having a shot at deadly cancer phenotypes. On dogs.. or us.
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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
I actually think this is a great idea for a company. Huge profit margins + little need for efficacy data. Give dogs checkpoint inhibitors + random mRNA, people pay $$ for possibly effective "AI personalized" treatment. Regulators won't solid evidence as not given to people. No insurers to get involved for complain, etc.
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