Dr. Aarón Ramírez

Have you encountered the problem to process gut tissue to obtain single-cell suspensions suitable for scRNAseq (or other follow-up studies)? Do you want to store gut samples for years until you complete your cohort? Check our new paper rdcu.be/cPGbl

Gaur, #otsailak11, neska eta emakume zientzialarien nazioarteko eguna da. Gurean egunero da otsailak 11. Kristalezko sabaian zartadurak eraginez, etorkizuneko emakume zientzialariak heziz; gure eguneroko jarduerarekin, sistema iraultzeko prest!👩🏻‍🔬💜✊️ #EmakumeakZientzian

Academic Research posters #academictwitter

gget: Efficient querying of genomic reference databases academic.oup.com/bioinformatics…

Today we want to congratulate the newest member of our lab @AaronRamirez02 as he was awarded on of the #JuandelaCierva fellowships. He will dig into the mysteries of inflammation related RNAs using high throughput techniques and analyses. Congrats Aaron and welcome to FunImmune!

Artificial intelligence assisted academic writing Ethical Use

What method should you use to track migrating cells? Read "Methods to analyze cell migration data: fundamentals and practical guidelines" to find the best cell tracking tool. Download the paper here: nature.com/articles/s4159…

E-values are the new p-values. A new 265 pages book from CMU and University of Waterloo. arxiv.org/pdf/2410.23614

Guide for automation with Bash scripts github.com/bobbyiliev/int…

Después de unos días de trabajo hago pública CONTRATACIÓN ABIERTA, una web donde se pueden revisar de forma fácil los contratos menores de las administraciones públicas de España. Hay más de 7,3 millones de contratos y 11.700 organismos públicos. 👇👇 contratacionabierta.es

The Immune Response

🚨 No todos los outliers se detectan igual ni se manejan igual.🚨 La decisión depende de su tipo y del objetivo del análisis. ¿Cómo diferenciar, detectar y manejar los distintos tipos de outliers?👇🧵 #stats #datascience #analytics #estadistica #cienciadedatos

Had a lovely lab reunion to welcome 2026! So good to catch up with past and present @FunImmune members. We missed those who couldn't make it today. Here's to a year of great science and even better teamwork! Happy new year! ✨️ Urte berri on! ✨️

In our latest work, we found that in coeliac disease, the duodenal epithelium shows subtle heterogeneity in its transcriptomic profile, revealed by RNA-seq of patient biopsies. doi.org/10.1038/s41435…

Biological systems find ingenuous solutions. Almost anything that can happen, happens. Still, I would not have guessed a role of RNA-binding proteins on the cell surface. The Flynn lab are boldly investigating glycoRNAs and following their leads.

xOmicsShiny: an R shiny application for cross-omics data analysis and pathway mapping biorxiv.org/content/10.110… #Rstats 🧬🖥️🧪 github.com/interactiverep…

RNA polymerase II coordinates histone deacetylation at active promoters science.org/doi/10.1126/sc…

Very happy to release the single cell and spatial long read RNA seq module for our transcript discovery and quantification tool Bambu (Bambu-clump)! The key challenges were dimensionality and accurate estimation of transcript expression with minimal data biorxiv.org/content/10.110…

Biomolecular condensates: It was RNA all along!: Molecular Cell cell.com/molecular-cell…

Mike Love's response: x.com/mikelove/statu…

Thrilled to introduce a new single-cell 3D genome analysis tool to our toolkit! Our high-throughput droplet Hi-C (dscHi-C) and dscHi-C-multiome methods use droplet microfluidics to generate tens of thousands of single-cell Hi-C profiles with high sensitivity in a single batch.