Sagar (@CryoSagar) - Twitter Profili | Zamantika Mersobahis Locabet

Sabitlenmiş Tweet

Sagar@CryoSagar·29 Ara

Hey #teamtomo checkout our team science approach to #cellbio #cryoET I can’t thank @bengeliscious enough for this one 😍😍 Awesome team science from @MPI_Biochem @biozentrum @thermosciEMSpec and more Signing off Twitter with a good one biorxiv.org/content/10.110…

English

1

4

31

2K

Sagar@CryoSagar·30 Ara

@AlisterBurt @bengeliscious @MPI_Biochem @biozentrum @thermosciEMSpec Yeahh!!! 🥳 that was some fun getting TOMOMAN-STOPGAP-Warptools pipeline go brrr 😂

English

0

2

140

Alister Burt@AlisterBurt·30 Ara

@CryoSagar @bengeliscious @MPI_Biochem @biozentrum @thermosciEMSpec Nice to see WarpTools (and others!) so well used for this one - congrats to all involved!! 🥳🥳

English

1

0

5

304

Sagar@CryoSagar·29 Ara

Hey #teamtomo checkout our team science approach to #cellbio #cryoET I can’t thank @bengeliscious enough for this one 😍😍 Awesome team science from @MPI_Biochem @biozentrum @thermosciEMSpec and more Signing off Twitter with a good one biorxiv.org/content/10.110…

English

1

4

31

2K

Sagar@CryoSagar·7 Eyl

Order in Chaos brought to you by #TOMOMAN with generous support from @williamnwan #teamtomo #cryoet #insitu #opensource biorxiv.org/content/10.110…

Florent Waltz@FlorentWaltz

Same for @CryoSagar and STOPGAP, which was instrumental here. But it still remains really difficult to make this kind of analysis because the processing pipeline is not as streamlined as in SPA. Actually, sometimes it really looks like that:

English

0

9

675

Sagar retweetledi

Structural Biology@ActaCrystD·13 Nis

William Wan et al.: STOPGAP: an open-source package for template matching, subtomogram alignment and classification #STOPGAP #CryoET #OpenSource @vanderbiltu... #IUCr scripts.iucr.org/cgi-bin/paper?…

English

0

4

7

1K

Sagar@CryoSagar·13 Nis

#STOPGAP is now published 🥳🥳 With @williamnwan and Twitter less Jonathan Wagner I must say, the peer review @ActaCrystD was as it should be, relevant, fast 😍 One of many to be published together with awesome @williamnwan #teamtomo #opensource #cryoEM

Will Wan@williamnwan

Our manuscript for STOPGAP is now out in @ActaCrystD! It was great working with @CryoSagar and twitterless Jonathan Wagner. journals.iucr.org/d/issues/2024/…

English

0

3

15

2.1K

Sagar retweetledi

Alister Burt@AlisterBurt·12 Nis

When I joined David Barford's group @MRC_LMB it was with the goal of using my cryo-ET and computational skills to help them understand funky biology. I joined @TDendooven and @StanislauY's efforts to average the native gamma tubulin ring complex (γTuRC) from tomograms of SPBs

GIF

English

1

24

161

13.1K

Sagar@CryoSagar·10 Nis

Now all we need some is #communitycompute to mine all this data together! And visualize life at molecular detail! #cryoET goes #bigdata Any thoughts from awesome people at @GoogleDeepMind @AmazonScience @nvidia @NVIDIAAI time to go brrrrr!!!!

Sagar@CryoSagar

Hey #teamtomo Here is EMPIAR-11830! Some 1800 tomograms from awesome #Chlamy (Chlamydomonas reinhardtii) using large scale #cryoET! In addition , all the metadata and preprocessing as #minimalproject to get you started right away! #TOMOMAN #bigdata #communityscience 1/

English

1

2

6

1.3K

Sagar@CryoSagar·10 Nis

Made possible by massive efforts @thermosciEMSpec @MPI_Biochem @maxplanckpress @biozentrum

English

0

3

308

Sagar@CryoSagar·10 Nis

Hey #teamtomo Here is EMPIAR-11830! Some 1800 tomograms from awesome #Chlamy (Chlamydomonas reinhardtii) using large scale #cryoET! In addition , all the metadata and preprocessing as #minimalproject to get you started right away! #TOMOMAN #bigdata #communityscience 1/

EMBL-EBI@emblebi

The new @EMDB_EMPIAR cryo-electron tomography (cryo-ET) browser allows you to see proteins up close in the cellular environment. Over 1,800 high-resolution reconstructed tomograms from cryo-plasma-FIB milled Chlamydomonas reinhardtii cells are available. ebi.ac.uk/about/news/ann…

English

3

7

35

5.4K

Sagar@CryoSagar·23 Şub

Congrats @svenklumpe 🥳🥳 This map looks so cool! I think this was and is one of those discovery moments in cryo-ET!

Sven Klumpe@svenklumpe

Over 4 years in the making, I am excited to share our pre-print on the “In-cell structure and snapshots of copia retrotransposons in intact tissue by cryo-electron tomography”. We used cryo-ET to resolve the copia capsid structure to subnanometer resolution inside cells. A 🧵

English

0

1

5

612

Sagar@CryoSagar·22 Ara

@williamnwan I must say that this wouldn’t be possible without the support from @MPI_Biochem @maxplanckpress @VanderbiltU

English

0

226

Will Wan@williamnwan·22 Ara

Just in time for Festivus, our preprint on STOPGAP is out! In it, we describe the subtomogram averaging algorithms we find useful. It was great working on this with @CryoSagar and twitterless Jonathan Wagner. biorxiv.org/content/10.110…

English

5

23

84

16.3K

Sagar@CryoSagar·22 Ara

Hey #teamtomo!! you can finally cite it properly! After ‘a while’ in making (mostly my fault🤣) , discussions on methods, philosophy, etc. with @williamnwan 🥳 it’s been a fun ride and I can only say look out for more 🤓😛

Will Wan@williamnwan

Just in time for Festivus, our preprint on STOPGAP is out! In it, we describe the subtomogram averaging algorithms we find useful. It was great working on this with @CryoSagar and twitterless Jonathan Wagner. biorxiv.org/content/10.110…

English

3

4

31

3K

Sagar@CryoSagar·21 Kas

@QiangGuo_EM @PNASNews This is awesome 🤩 congrats 🎉

English

0

147

Qiang Guo@QiangGuo_EM·21 Kas

Excited to share our latest work published in @PNASNews! Utilizing cryo-ET, we have successfully visualized the force that segments the nucleus. The whole story works out in an imaging-driven approach. #TEAMTOMO

English

5

15

118

12.8K

Sagar@CryoSagar·19 Eki

Just go for it! Don’t blink ;) Cool stuff with even cooler scientists!!

Wim Hagen@WimJHH

My indispensable right hand Natalya Dudkina is hiring, join our exciting R&D group at Thermo Fisher Scientific as Application Engineer, Cryo-EM. RT please! jobs.thermofisher.com/GmABVUk

English

0

2

1K

Sagar@CryoSagar·19 Eyl

@bengeliscious @A_Amunts @AbhayKot @thermofisher @FlorentWaltz @EMDB_EMPIAR @williamnwan The future is @Arm🤓🤓

English

0

171

Ben Engel@bengeliscious·19 Eyl

@CryoSagar @A_Amunts @AbhayKot @thermofisher @FlorentWaltz @EMDB_EMPIAR @williamnwan These tools are great, but now that we are dealing with these massive volumes of data, they desperately need GPU acceleration. I hope that gets released soon!!!

English

1

0

1

209

Sagar@CryoSagar·19 Eyl

@bengeliscious @A_Amunts @AbhayKot @thermofisher @FlorentWaltz @EMDB_EMPIAR Indeed! This project is a marathon 💪 But thanks to an amazing partnership with @williamnwan for #TOMOMAN and #STOPGAP, we can dream of taking on such daunting tasks 🥳🥳🥳 Especially our recent efforts in #TOMOMAN has been quintessential for this project 😇😇 #opensource

English

1

0

3

385

Ben Engel@bengeliscious·19 Eyl

@A_Amunts @AbhayKot @thermofisher @FlorentWaltz @EMDB_EMPIAR Daunting indeed! Huge props to @AbhayKot’s team for generating it and both @CryoSagar and our team for processing and curating it. It’s become a big group project in our lab just to get these tomograms ready & annotated, and here I want to give HUGE props to Ricardo Righetto!👨🏾‍💻💪🏽

English

1

0

2

625

Sagar@CryoSagar·18 Eyl

When @AbhayKot and I started this thing, this is what we envisioned! Thanks for the support from JP, @MPI_Biochem and @thermosciEMSpec we can now see the fruits ☺️ can’t wait for the release with @EMDB_EMPIAR! It’s been even more fun with @bengeliscious and team joined😍

English

0

1

24

4.5K

Sagar@CryoSagar·13 Eyl

@QiangGuo_EM @MPI_Biochem @thermosciEMSpec Thank you @QiangGuo_EM ☺️ hoping to see you sometime sooner 😊

English

0

83

Qiang Guo@QiangGuo_EM·13 Eyl

@CryoSagar @MPI_Biochem @thermosciEMSpec Congrats Sagar! 👏👏👏

English

1

0

1

167

Sagar@CryoSagar·13 Eyl

From Am Klopferspits 18 @MPI_Biochem to Achtseweg Noord 5 @thermosciEMSpec 😉 slowly making it to the mothership!

English

2

0

15

1.9K

Sagar@CryoSagar·13 Eyl

@mdickmanns1 @MPI_Biochem @thermosciEMSpec They say a GIF says more than words! 🤓

GIF

English

0

100

Sagar@CryoSagar·13 Eyl

@MPI_Biochem @williamnwan @3P1L And of course over past couple years collaborating with @AbhayKot and the team at @thermosciEMSpec has been amazing! Now looking forward to amazing science we will do together @thermosciEMSpec 😍 I think we are baking some cool things;)

English

1

0

7

404

Sagar@CryoSagar·13 Eyl

It’s been Amazing 5+years @MPI_Biochem with Juergen Plitzko! I have been fortunate to have great mentors as JP, @williamnwan, @3P1L. It’s been fun hanging out with and doing cool stuff with the Martinsried peeps and looking forward to more;)

English

1

0

6

354

Sagar

Keşfet