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Genetic variation in a complex polyploid: unveiling the dynamic allelic features of sugarcane biorxiv.org/content/early/…
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Danilo Sforça
108 posts
Danilo Sforça retweetledi
Just published🍾: New 319 Orphan Genes in the Saccharum spontaneum genome, only present in plants belonging to Saccharinae: 66 OGs were cold and osmotic stresses-responsive genes. Congrats, @BenicioCS, @AonoAlexandre and collabs👏😊😁🙌 @FrontPlantSci doi.org/10.3389/fpls.2…
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Danilo Sforça retweetledi
Happy to see our review paper "An Overview of the Genetics and Genomics of the Urochloa Species Most Commonly Used in Pastures" out in @FrontPlantSci frontiersin.org/article/10.338…
Thanks for the collaboration @alinedclm @anetepsouza @MMAPULLA @bibavigna @Lu_Chiari
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Danilo Sforça retweetledi
Really pleased to see our manuscript published in Plos One. Many thanks to Prof. Fabio Augusto Faria for this amazing experience during my and @shin_nagai's undergraduate years.
journals.plos.org/plosone/articl…
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Danilo Sforça retweetledi
A Pipeline to identify contaminants in GBS data encoded as allele dosages SNPs. It can be applied to any 4X or 6X species since parents of F1 biparental cross are known. Congrats @Felitencourt @alinedclm and all collabs @FrontPlantSci @AgenciaFAPESP @unicampoficial @CAPES_Oficial
Felipe Bitencourt Martins@Felitencourt
Looking for a fast and easy way to identify contaminants in genotyped biparental polyploid populations? In this paper we not only proposed an efficient methodology but also implemented it in a user-friendly R shiny web app called PolyCID. frontiersin.org/articles/10.33… (1/5)
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Danilo Sforça retweetledi
Danilo Sforça retweetledi
Interested in disease resistance, genomics, quantitative genetics and machine learning? That is all covered by our latest paper, just published at @SciReports! nature.com/articles/s4159… (1/3)
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Danilo Sforça retweetledi
I'm very glad to see our manuscript published. Congrats @rjgpimenta @BassoLetycia @Fernando_Correr @HosakaGuilherme @marishani17 @Beniciocsilva @DSforca @santos_lucasb @shin_nagai @gramarga @anetepsouza and all collaborators!!
Frontiers - Plant Science@FrontPlantSci
New Research: The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns: The protein kinase (PK) superfamily is one of the largest superfamilies in plants and the core regulator of… frontiersin.org/articles/10.33… #PlantScience #PlantSci
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Danilo Sforça retweetledi
Le CNRGV recrute un(e) technicien(ne) en biologie moléculaire !🧬
Tous les détails du poste sur jobs.inrae.fr/ot-11808
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Danilo Sforça retweetledi
Finally out! New preprint: An Automated SNP-based Approach for Contaminant Identification in Biparental Polyploid Populations 🤓🌱
Happy for this collaboration! Thanks @Felitencourt @alinedclm @AonoAlexandre @anetepsouza @embrapa biorxiv.org/content/10.110…
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Danilo Sforça retweetledi
Outstanding diploid wheat (5Gb) genome assembly: Pacbio Hifi + Optical Map using in house DNA extrac. protocol🎉
OMAP: 120 maps/N50=164Mb
Hybrid assembly: 24 Scaff/N50=522Mb
Collab w/ @haneenih7 @SimonKrattinger @AbroukMichael @Wheatlab
@Stephane_Cauet @NathCNRGV @caroline_callot
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Danilo Sforça retweetledi
Just online: The synergistic actions of hydrolytic genes reveal the cellulose degradation mechanism of Trichoderma harzianum & genes with strong correlations necessary for saccharification
Congrats @aires_deborah @marau_ch @jaire_hp @Nataliafmurad 😊🙌👏
lnkd.in/gaqY23G
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Danilo Sforça retweetledi
We used our R packages #MAPpoly and #QTLpoly to generate new insights on the genetics of #polyploids - using tetraploid potato data as an example. Check it out @HeredityJournal!
Heredity@HeredityJournal
OA The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population go.nature.com/3ruEUdP #MAPpoly #QTLpoly #Rpackages #autotetraploid @guispereira @mmollina @CraigYencho @zengzhaobang
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Danilo Sforça retweetledi
Wenbin Mei@wbmei
@Inari_Ag is looking for a Genomic Data Analyst to join Bioinformatics Team on the Platform to work with @YJ910 and myself to support Inari’s genome editing and cross functional team. Please RTs. @HBERGES_USA @AgGenomicsGuy @FredVanEx #CRISPR #GENOMICS boards.greenhouse.io/inariagricultu…
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Danilo Sforça retweetledi
Now online! Unprecedented! A revolution for the identification of regions linked to disease resistance in sugarcane and other complex polyploid plants
Congratulations @AonoAlexandre @CostaEstela11 and collaborators 🙂🙃
@unicampoficial @AgenciaFAPESP @CAPES_Oficial @CNPq_Oficial
Alexandre Aono@AonoAlexandre
Just published: Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance disq.us/t/3syuet8 Congratulations @CostaEstela11 @hugorody @shin_nagai @rjgpimenta @anetepsouza and all collaborators 👏👏
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Danilo Sforça retweetledi
Just published 😊: unveiling fungal genome structure and function reveals the potential biotechnological use of fungi. T. harzianum is a powerful CAZyme-producing fungus. Congrats @jaire_hp @cleltonsto @marau_ch @aires_deborah @DSforca @BenicioCS & collaborators 👏👏🙂😊🙃
Clelton Santos@cleltonsto
Hello biomass degraders and beyond! Check out our new article biopropecting for regulators and accessory enzymes associated with cellulose degradation 🌱 💥! @PesquisaFapesp @unicampoficial @cbmeg2 @CNPq_Oficial @CAPES_Oficial rdcu.be/b9Smv
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Danilo Sforça retweetledi
Se somos o que comemos, então o que comemos também é o fruto da própria alimentação, certo? @alinedclm @FernandaAncelmo @RebeccaUlbricht nos contam como o melhoramento genético das forrageiras está na base disso no novo post do DNA explica @BlogsUnicamp
blogs.unicamp.br/dnaexplica/202…
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Danilo Sforça retweetledi
The first catalog of kinase gene family in Saccharum spontaneum and Sorghum bicolor: it provides a reservoir of molecular features and expression patterns based on RNA-Seq and co-expression networks
Congrats @AonoAlexandre @rjgpimenta and collaborators😊
biorxiv.org/content/10.110…
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Danilo Sforça retweetledi
Our latest contribution describes the catalog of kinase gene family in sugarcane and sorghum. Congrats @anetepsouza @rjgpimenta @BassoLetycia @Fernando_Correr @GuilhermeHosaka @BenicioCS @marishani17 @DSforca @santos_lucasb @shin_nagai @gramarga and all collaborators
Anete Pereira de Souza@anetepsouza
The first catalog of kinase gene family in Saccharum spontaneum and Sorghum bicolor: it provides a reservoir of molecular features and expression patterns based on RNA-Seq and co-expression networks Congrats @AonoAlexandre @rjgpimenta and collaborators😊 biorxiv.org/content/10.110…
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Danilo Sforça retweetledi
"Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate".
Congratulations to all for this efficiency work!🇸🇦👏🧬
#opticalmapping #foniomillet #genome #bioinformatics @NatureComms
cnrgv.toulouse.inrae.fr/fr/Communicati…
rdcu.be/b6U55
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Danilo Sforça retweetledi
Join our team @Inari_Ag : apply for one of the Hottest Jobs in Boston Tech listed by @VentureFizz venturefizz.com/hottest-jobs-b…
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