Greene Laboratory

“Manubot is a series of software packages, as well as some of the glue to tie them together, that lets you turn a GitHub repository into a self-published manuscript.” natureindex.com/news-blog/thre…

Prodigious #SVG tutorial created by our frontend developer @VinceRubinetti. Learn how to code SVGs by hand with 6 practice exercises. greenelab.github.io/intro-to-svgs/

Our paper "Open collaborative writing with Manubot" is now available at @PLOSCompBiol. #Manubot uses Markdown + GitHub for continuous publication. doi.org/10.1371/journa… 1/8

Videos from #FORCE2018 now online. 🎥 See my talk on #Manubot at youtu.be/sGL0osdby0U?li… (playlist links to other talks). Thanks @force11rescomm for the great recording & releasing it under a @creativecommons license… wish all conferences did this!

Projects include: • Manubot: a system for writing scholarly manuscripts on GitHub greenelab.github.io/manufund-2018/ • Adage: neural network based gene set analyses adage.greenelab.com • Tribe: crowdsourced gene collections tribe.greenelab.com Where big data & biology meet!

Interested in making webapps to help research diseases & make science more accessible, transparent & reproducible? The @GreeneLab is hiring a frontend software engineer in #Philly. Job includes #uiux, #reactjs #webdev #css #js #git #opensource jobs.hr.upenn.edu/postings/37984

Manubot v0.2.0 now released at pypi.org/project/manubo… including the `manubot cite` command-line utility. Easily generate CSL metadata and references for 1000s of bibliographic styles from standard citation identifiers, such as doi:10.1038/nbt.3780; pmid:29424689; arxiv:1407.3561

"Revolutionizing scholarly writing with the Manubot: a foreshadow of publishing's future" by @dhimmel. Come see this and other amazing talks at #FORCE18 this October in Montreal! buff.ly/2ILp359

Yesterday we celebrated with @nanditagarud who will be joining @uclaeeb as a new faculty in 2019! We are so excited for you Nandita!

#GI2018 @GreeneScientist shows that PLIER can be applied to many datasets and you can use the latent vars to ID function across OTHER datasets. bit.ly/MultiPLIER I think this is the PLIER package: github.com/wgmao/PLIER

Casey’s lab develops methods to analyze big biological data and makes these tools/data accessible for the rest of us. If you want a brilliant and inspiring postdoc mentor with a refreshing irreverence for the status quo, look no further! twitter.com/greenescientis…

The accepted manuscript of the @Sci_Hub Coverage Study published in @eLife (typeset version in the next few weeks) doi.org/10.7554/eLife.… Thanks @arielswn, Levernier, Munro, @SteveMcLaugh, @gedankenstuecke, and @GreeneScientist for your contributions!

@anshulkundaje @GreeneScientist One takeaway is that everyone was so helpful and constructive when reviewing new text. Working toward a common goal made it very different from typical manuscript review.

In a rebuke to the closed world of scientific research, volunteer coders help @Penn take on cancer! By @roxanneshep thephiladelphiacitizen.org/code-for-cance…

#Cognoma Launch Party tonight at @MilkBoyPhilly. Details at meetu.ps/3dzlvc. Get ready for the celebration and historic raffle! twitter.com/verypickyeater…

The #Cognoma Launch Party 🎉 will be 6–9PM Wednesday, October 11, 2017 at @MilkBoyPhilly. Hope to see you there! meetu.ps/3dzlvc

Manubot's use of Continuous Integration mentioned in @NatureNews at doi.org/cdvr. Manubot uses CI for continuous publication!

Research parasites wanted. Q&A w/ @GreeneScientist & @thebyrdlab on the #researchparasite & #researchsymbiont awards gigasciencejournal.com/blog/research-…

I just wrote my first ever blog post! It's about the Data Refinery, a project I've been working on for a while: ccdatalab.org/blog/data-refi…

New blog post from @datawheeler about the #DataRefinery we're building! ccdatalab.org/blog/data-refi…