Jalview @jalview.bsky.social

578 posts

Jalview @jalview.bsky.social banner
Jalview @jalview.bsky.social

Jalview @jalview.bsky.social

@Jalview

A Java (and js!) multiple sequence alignment editor for the analysis and visualisation of protein, DNA and RNA sequences.

University of Dundee Katılım Mart 2012
63 Takip Edilen630 Takipçiler
Miss Ogilvie
Miss Ogilvie@bio_with_misso·
Any excuse to add in some bioinformatics 👩🏼‍💻🧬 S3s researched the evolution of bears using @Jalview for their double this morning. What an exciting way to finish off their DNA topic, pulling in interdisciplinary learning from geography & computing too! 🐻🐼🐻‍❄️🌍💻
Miss Ogilvie tweet mediaMiss Ogilvie tweet mediaMiss Ogilvie tweet mediaMiss Ogilvie tweet media
English
1
0
6
862
Riki
Riki@r_i_k_i_111·
今年出張減るって言われてたのに 現時点ですでに仙台数回と長野数回が決まっている… 往復で最低12回は新幹線に乗るのが確定してる これJALViewカードゴールドカード作った方が会社の経費で発生するポイント還元めっちゃいいんじゃないかな?? 飛行機も数回乗るだろうし
日本語
1
0
3
443
lou
lou@mzfcknhyde·
como pode o jalview na coloração Taylor ter realmente as cores do álbum dela e isso não ser proposital
Português
1
0
1
27
fesha
fesha@fesh__a·
сейчас неиронично пять минут вьібирала цвет следующей колонки в jalview потому что видите ли все красивенькие предьідущие уже занятьі а остальньіе не ложатся как надо
Русский
2
0
2
150
Jose
Jose@joseheronleyva·
No me pregunten sobre programación de PLC, 'mbre. En la uni aprendí que transforman una señal analógica en digital y poco más que eso. Nunca me gustó programar. Culpo a SciLab y Jalview de eso.
Español
1
0
1
40
Naoya KOBAYASHI
Naoya KOBAYASHI@kobnaoya·
いつも色分けに使っているHPPNcolor github.com/naokob/HPPNcol… のリポジトリにJalView jalview.org 上で配列アラインメントを表示させた時にHPPNcoloringに沿って色分けるcolor schemeファイルを加えた。
日本語
2
2
19
2.3K
Simbong Mutia
Simbong Mutia@ash_wng·
Unfortunate to reminisce that I slept through a lecture by Jalview chief bugtester, anyway inspirational to know that the og jalview creator Michele Clamp is a full time artist, and the head of SIL Malaysia was a lockheed martin engineer before a full time job in linguistics
English
1
0
3
111
Ryan sikorski
Ryan sikorski@Ryansikorski10·
Jalview Jalview is a free cross-platform program for multiple sequence alignment editing, visualisation and analysis. Use it to align, view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation. Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities, and provides a linked view of aligned DNA and Protein products. It uses Jmol to view 3D structures,jmol.sourceforge.net and VARNA to display RNA secondary structure,varna.lri.fr and can also use Chimera,cgl.ucsf.edu/chimera/ ChimeraX cgl.ucsf.edu/chimerax/ and Pymol pymol.org/2/ for 3D structure visualisation. Experimental and predicted (eg alphafold and swiss-model) 3D structures for proteins can be automatically discovered via the 3D-Beacons network,ebi.ac.uk/pdbe/pdbe-kb/3… and sequences and alignments retrieved from databases hosted at EMBL-EBI.ebi.ac.uk The Jalview Desktop also provides a graphical interface to the alignment and analysis services provided by the JavA Bioinformatics Analysis Web Services framework.compbio.dundee.ac.uk/jabaws/ 🔗jalview.org
Ryan sikorski tweet media
English
1
6
10
547
Jalview @jalview.bsky.social
2024 was a fun year for us at Jalview! We've been busy, so here's a little 'scrapbook' for you to see all the exciting things we got up to last year. 📆
English
3
1
9
397
Jalview @jalview.bsky.social
And here's a wee photo of the artist, Poppy (right) and @KhadijasVoice (left) from our team who tutored her for this piece, hanging out at the exhibition.
Jalview @jalview.bsky.social tweet media
English
0
1
5
133
Jalview @jalview.bsky.social
This A1 sized piece by @DJCAD student, Poppy Gilfillan, is a mandala-collage that explores the interconnectedness of all life forms, including homologous proteins that Jalview provides alignment capabilities for.
Jalview @jalview.bsky.social tweet media
English
1
0
4
116