Jonathan Patrick Broadbent

My first paper published in Bioinformatics. We present a python package for doing machine learning tasks on RNA graphs. Check it out!

@summerknocks Leafs song request: Peace in Silence by Bunt!

Nanomix is tool that could remove the need for complex #epigenomic assays by leveraging native #nanopore sequencing. At #nanoporeconf, @Jonbroad15 will discuss the potential of bringing this application closer to a point-of-care scenario, in the future: bit.ly/41M2WUQ

I am participating in 2022 TCS Toronto Waterfront Marathon on October 16, 2022 at 8:00 A.M. EDT. Help me raise money by sponsoring me! raceroster.com/events/2022/34…

nanopolish v0.14.0 released, with support for modification bam files (thanks @BonfieldJames and @chrisnrg) and compiling on M1 macs

Rust bioinformatics programmers: is there an idiomatic way of processing records of a bam file in parallel? Examples appreciated!

@ebioman @RuSt Hey did you figure out a solution for this? Currently struggling with the same problem.

Has somebody by chance a @rust htslib example how to correctly set up a indexed BAM reader thread pool and then read + manip in parallel for records via threads? Struggling and found doc bit unclear

Engineered anthocyanin biosynthesis allows modulation of tomato fruit colours ranging from 'Crimson' over 'Magenta' to 'Indigo' #FlavonoidFriday (details: lnk.tu-bs.de/Ro3vE7)

Thank you to my lab for the amazing nanopolish socks! I hope there's no bugs in this code, it would be very hard to fix now

@jim_elevator @YunWilliamYu Great to see it's finally out! congrats Jim.

Me and @YunWilliamYu's work on local k-mer selection techniques is now accepted to Bioinformatics! We investigate both practically and theoretically the properties of different local k-mer selection techniques, the most well-known being the minimizer. academic.oup.com/bioinformatics…