Junil Kim

We were able to propose one of the immune evasion mechanisms in CRC through single-cell RNA sequencing, and validated it with cell-based experiments. Our study has been published in Cancer Communications. spj.science.org/doi/abs/10.341…

생명정보학회에서 2026년 교육워크샵을 준비했습니다. 최신 트렌드에 맞춰서 파운데이션 모델 등의 강의를 새롭게 제공하고 있습니다. 많은 등록 부탁드립니다. biml2026.ksbi.or.kr

A Generalizable Transformer Framework for Gene Regulatory Network Inference from Single‐Cell Transcriptomes - Weng - Advanced Intelligent Systems - Wiley Online Library advanced.onlinelibrary.wiley.com/doi/10.1002/ai…

Is the GRN that governs development easier to control in the early or late stages? We analyzed zebrafish developmental stages to find the answer. I am happy to share that our work, conducted with my students has been published in Scientific Reports. doi.org/10.1038/s41598…

CellCraft: an extensible visual programming application for gene regulatory network inference academic.oup.com/bioinformatics…

Huge thanks for the SCODE acceleration! Amazing job! 👍

@dritoshien Thanks for your acknowledgment

FastSCODE: an accelerated SCODE algorithm for inferring gene regulatory networks on manycore processors academic.oup.com/bioinformatics…

CluVar: clustering of variants using autoencoder for inferring cancer subclones from single cell RNA sequencing data academic.oup.com/bib/article/26…

Patrick’s Vesalius 2.0 enables an interpretable cell-cell mapping in spatial context. Congratulations!! nature.com/articles/s4146…

Applying a foundation model for gene and cell to reconstruct gene regulatory networks (GRN). Great performance and transferability. It performs even for unseen cell type and regulators . Works by Guangzheng, @pcnmartin and @HyobinKim4 at Advanced Sci. doi.org/10.1002/advs.2…

FastTENET: an accelerated TENET algorithm based on manycore computing in Python academic.oup.com/bioinformatics…

Application of computational algorithms for single-cell RNA-seq and ATAC-seq in neurodegenerative diseases academic.oup.com/bfg/article-ab…

Inflammatory transcriptomic signatures and cell type compositions in i... sciencedirect.com/science/articl… Deconvolution of RNAseq of UC into cell type transcriptional signatures

I'm excited to share our recent preprint, which investigates scRNA-seq and spatial transcriptomic analysis in Parkinson’s disease patients from Korea. Working with human brain tissue has been invaluable, and I'm grateful for the contributors' valuable input in this study!

I am happy to share our preprint of a Parkinson’s disease study using snRNAsrq and Visium. We found PD-related transcriptomic and regional changes of astrocytes and microglia. biorxiv.org/content/10.110…

Current computational methods for spatial transcriptomics in cancer bi... sciencedirect.com/science/articl…

[책소개] 유전자지배사회 - KAIST 최정균 교수 youtu.be/wMfg7dBGU-Q?si… via @YouTube