GenomeMining

FrustraMPNN: tool for proteome-scale analysis of deep mutational single-residue local energetic frustration in proteins doi.org/10.64898/2026.… NAVIP: Unraveling the Influence of Neighboring Small Sequence Variants on Functional Impact Prediction doi.org/10.1101/596718

JanusX: an integrated and high-performance platform for scalable genome-wide association studies and genomic selection doi.org/10.64898/2026.… Genomic characterization of a nematode tolerance locus in sugar beet doi.org/10.1101/2023.0…

Rare shell colours in bivalves reveal multiple evolutionary pathways to blue and green colouration doi.org/10.64898/2026.… Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae doi.org/10.1101/2025.1… #Evolution #Genomics

FastSpeciesTree: Fast and Scalable Species tree Inference doi.org/10.64898/2026.… Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae doi.org/10.1101/2025.1…

Phased genome assembly reveals post-allopolyploidization subgenomic diversification of tobacco centromeres doi.org/10.64898/2026.… Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana doi.org/10.1101/2024.0…

Pangenome Analysis of Pyrus Reveals Potential Role of Transcription Factors in Recent Adaptation to Arid Environments doi.org/10.64898/2026.… Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet doi.org/10.1101/2023.0…

On the correctness of gene tree tagging and the consistency of ASTRAL-pro under a unified model of gene duplication, loss, and coalescence doi.org/10.64898/2026.… DupyliCate - mining, classifying, and characterizing gene duplications doi.org/10.1101/2025.1…

Pangenome analysis reveals the evolutionary dynamics of repeat-based holocentromeres doi.org/10.64898/2026.… Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet doi.org/10.1101/2023.0… #Genomics #Bioinformatics

A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula) doi.org/10.64898/2026.… Automatic identification and annotation of MYB gene family members in plants doi.org/10.1101/2021.1… #PlantSci

Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR doi.org/10.1186/s12864… #Evolution #FlavonoidBiosynthesis #PlantSciences #Bioinformatics #Genomics #SciComm #OpenScience

Conservation of non-consensus nucleotides in transcription factor binding sites doi.org/10.64898/2025.… Automatic identification and annotation of MYB gene family members in plants doi.org/10.1101/2021.1… #TranscriptionFactors #GeneExpression

Sweet signals: Using floral traits to predict nectar sugar availability doi.org/10.64898/2026.… Genome sequence of the ornamental plant Digitalis purpurea reveals the molecular basis of flower color and morphology variation doi.org/10.1101/2024.0… #Genomics #Evolution #Ecology

Arabidopsis TITAN LIKE is required for U12-type intron splicing, especially for AT–AC subtypes doi.org/10.1101/2025.0… Animal, fungi, and plant genome sequences harbour different non-canonical splice sites doi.org/10.1101/616565 #Genomics #Bioinformatics

Long-read sequencing is rewriting plant genomics! 🌱 With Oxford Nanopore & PacBio tech, even huge, complex genomes can be assembled faster and with higher quality. This paper explores progress, challenges, and what’s next 🚀🔬 doi.org/10.1017/qpb.20… #Genomics #PlantScience

HapBridge: A Methylation-Guided Approach for Correcting Switch Errors and Bridging Phased Blocks in Long-Read Phasing doi.org/10.1101/2025.1… Cookbook for Plant Genome Sequences doi.org/10.20944/prepr…

Diversity and ecological functions of anthocyanins doi.org/10.1186/s12870…

The molecular basis of the binding and specific activation of rhizobial NodD by flavonoids | Science science.org/doi/10.1126/sc…

ROTIS: A RUBY-assisted one-shot tissue-culture-free system for in-planta soybean transformation from germinated seedlings (Yongguang Li , Ke Lu , Shunli Feng , Ran Ning , Haiyan Li , Xue Zhao , Yubing He , Yingpeng Han) doi.org/10.1093/plphys… @ASPB #PlantSci

Genome-wide & stress-responsive landscape of the Pectin methylesterase gene family in cucumber & muskmelon doi.org/10.64898/2026.… Large-scale Phylogenomics Reveals Systematic Loss of Anthocyanin Biosynthesis Genes at the Family Level in Cucurbitaceae doi.org/10.1101/2025.1…

Two PhD Positions in Plant Pathology at Kiel University (CAU), Germany – Start March 2026: agristok.net/2026/01/08/phd… via @agristok