NIH HPC
341 posts
NIH HPC
@nih_hpc
The @NIH #HPC team plans, manages, & supports high-performance computing systems for the @IRPatNIH, including the @top500supercomp #Biowulf cluster
Bethesda, MD, USA Katılım Şubat 2016
89 Takip Edilen229 Takipçiler
When your pipelines generate HTML reports on #biowulf, you don't have to copy all the results back to your desktop to catch a glimpse. Use hpcdrive to locally mount your hpc storage and browse directly to it. hpc.nih.gov/docs/hpcdrive.… #TipTuesday
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NIH HPC retweetledi
Paul Gonzalez from our lab @genome_gov @IRPatNIH presenting his work on the evolution of non-coding elements associated with homeobox genes at #SICB2023 – an extremely computationally intensive study that wouldn't have been possible without being #PoweredByBiowulf! @NIH_HPC
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NIH HPC retweetledi
Sofia Barreira from our lab @genome_gov @IRPatNIH presenting her work on the evolutionary history of the nucleolar transcription factor at #SICB2023... sequence meets structure! #AlphaFold #ProteinFolding
@NIH_HPC #PoweredByBiowulf
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Be careful about loading modules and activating conda environments in your bashrc. It's nice to have all your tools at your fingertips when you log in, but they don't always integrate well with each other. Load only what you need when you need it. #TipTuesday
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If you have a lot of short (<5min) jobs, bundle them up to get a bulk discount on your scheduling time. swarm's --bundle option will group them into bundles & run each bundled command in succession within a single subjob.
See #bundling" target="_blank" rel="nofollow noopener">hpc.nih.gov/apps/swarm.htm…
#TipTuesday #hpctips
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You: I have a lot of samples to process. I’ll just run sbatch out of a for-loop, and then I—
Us: No! Use a job array. Or even better, use swarm on #Biowulf.
hpc.nih.gov/apps/swarm.html #TipTuesday #hpctips
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Do you have short ( < 4 hr) jobs that you want to start quickly on #Biowulf? Consider submitting to the 'quick' partition to get priority scheduling. #TipTuesday
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NIH HPC retweetledi
Impressive! To learn about some of the ways that #NIH #COVID19 research in particular has been #PoweredByBiowulf, check out this piece on our "I Am Intramural" #blog: irp.nih.gov/blog/post/2020…
NIH HPC@nih_hpc
There are now 5000 papers #PoweredByBiowulf! 🥳 We're proud to support the @IRPatNIH with this essential resource and looking forward to enabling many more papers to come. ☺️
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There are now 5000 papers #PoweredByBiowulf! 🥳 We're proud to support the @IRPatNIH with this essential resource and looking forward to enabling many more papers to come. ☺️
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Your #biowulf job is coming up on its walltime limit, but it's not done yet 😬 What do you do? Use newwall to extend your walltime*! #TipTuesday
*up to the partition time limit. other restrictions apply. see #modify_job" target="_blank" rel="nofollow noopener">hpc.nih.gov/docs/userguide… for details
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The user dashboard is your #Biowulf control room. See and request changes to your groups and disk quotas. Monitor your jobs and resource utilization. hpc.nih.gov/dashboard #TipTuesday
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Using network storage for temp files is like making a new trip to the store for each ingredient in your sandwich. Reduce traffic 🚦. Use local scratch instead. #local" target="_blank" rel="nofollow noopener">hpc.nih.gov/docs/userguide… #TipTuesday
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NIH HPC retweetledi
Curious how #NIH researchers are utilizing @nih_hpc's #Biowulf #supercomputer in their research? Visit the "I Am Intramural" #blog to learn about one such study that could help lead to a medication that reduces the side effects of #cancer #chemotherapy: go.usa.gov/xueNR
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Congratulations!
National Human Genome Research Institute@genome_gov
Congratulations to @genome_gov’s @JulieSegre, who has been elected to @theNASciencesfor for her work in microbial genomics and human health! Her research has been crucial in tracking several skin diseases. Read more about her amazing research career: go.usa.gov/xtnsf
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@aphillippy Congratulations to you and all of #T2T! We're proud to have been of assistance to this important project.
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Today is the big day! The #T2T consortium is claiming victory and announcing that we have finally uncovered every last bit of the human genome! The papers are out today 🥳🧬 science.org/toc/science/37…
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NIH HPC retweetledi
Congratz to @aphillippy and his #NIH @genome_gov team, as well as their collaborators in the #T2T consortium, on this huge achievement! And, of course, the team at @nih_hpc, who run the Biowulf #supercomputer that leant its massive computational power to this effort!
National Human Genome Research Institute@genome_gov
Scientists in the Telomere-to-Telomere (#T2T) consortium have published the first complete, gapless human genome sequence. This can lead to a better understanding of our genomic variations and provide insight for missing heritability and human disease. genome.gov/T2T
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NIH HPC retweetledi
@BaxevanisLab @genome_gov Thanks Andy! And mark this down as another @nih_hpc success story. All the assemblies ran there and the whole consortium relied on our Globus share, all during a pandemic. Hats off to them!
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NIH HPC retweetledi
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