Public Journal Club Computational Biology

146 posts

Public Journal Club Computational Biology

Public Journal Club Computational Biology

@PJCCompBio

Passionates of Computational Biology. We have Journal Clubs where we discuss trends in Computational Biology in company with the authors.🇲🇽

Every where Katılım Kasım 2020
225 Takip Edilen489 Takipçiler
Lior Pachter
Lior Pachter@lpachter·
It's time to stop making t-SNE & UMAP plots. In a new preprint w/ Tara Chari we show that while they display some correlation with the underlying high-dimension data, they don't preserve local or global structure & are misleading. They're also arbitrary.🧵biorxiv.org/content/10.110…
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Public Journal Club Neurobiology
Public Journal Club Neurobiology@PJCNeurobiology·
Ya existe mucha investigación en órganos individuales pero, ¿cómo interaccionan distintos órganos con distintas funciones, como el sistema nervioso y el sistema digestivo? ¿cómo se regulan? ¡Sígannos en la siguiente sesión de Key Concepts con el Dr. Moisés del Tec. Monterrey!🧠🍲
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Public Journal Club Computational Biology
It's tomorrow! Do you know that more than 750,000 publicly available RNA-seq datasets are accessible? Join and hear about recount3, a tool that enables access to all these resources!
Public Journal Club Computational Biology@PJCCompBio

Next week the @PJCCompBio 👩‍💻👨‍💻 is back! We will learn more about the ReCount3 project 📊 and ask our questions 🙋‍♀️ 🙋directly to the author @BenLangmead Registration: shorturl.at/flBPS Paper: shorturl.at/KM129

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Daniela Robles @daniela-oaks.bsky.social
It's out now! Our preprint investigating potential causal variants within regions associated to #melanoma risk through GWAS. This study took a very, very long time & ran through many bumps. So glad it's out. Massive congrats to 1st author @citosina who drove it to the end!
Carolina Castañeda, PhD@citosina

Check out our latest pre-print! Fine-mapping of melanoma-associated genomic regions identifies novel causal SNPs in the MTAP/CDKN2A and CASP8 loci medrxiv.org/cgi/content/sh…#medRxiv

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Olga Botvinnik 🇺🇦
Olga Botvinnik 🇺🇦@olgabot·
SO THRILLED to share this work. First of all, thank you to my fearless coauthors Pranthi Vemuri, @saltyscientist @PhoenixLogan @saba_nafees314 and @lekha_karanam for their tireless efforts in surviving cell barcodes, Makefiles, Nextflow, and definitions of orthology. 1/20
bioRxiv@biorxivpreprint

Single-cell transcriptomics for the 99.9% of species without reference genomes biorxiv.org/cgi/content/sh… #bioRxiv

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Daniela Robles @daniela-oaks.bsky.social
Virtual meetings increase accessibility for researchers in low and middle-income countries, & promise to reach scientists unable to travel because of visa issues or other reasons! Thanks @serghei_mangul for the opportunity to collaborate w/ your group in this exciting work!
Serghei Mangul #UkraineWillWin 🇺🇦🇲🇩🇺🇸@serghei_mangul

1/n New preprint from @MangulLab co-leaded by Anushka Rajesh titled "Virtual meetings promise to eliminate the geographical and administrative barriers and increase accessibility, diversity, and inclusivity" Great collaboration with @RiyueSunnyBao Lab. biorxiv.org/content/10.110…

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Public Journal Club Computational Biology
Can you visualize cancer evolution? Yes, you can!! Join us tomorrow to know how spatial genomics and statistical modelling can reveal the transcriptome and histopathology of different clones within tumors
Public Journal Club Computational Biology@PJCCompBio

Have you heard about spatial genomics?🌠👩‍🔬🧑‍🔬 Are you interested in cancer?🦀Do you like stats? 📈In our next PJC, we will discuss a great paper that combines these disciplines to understand cancer evolution!!!

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Ahmet F. Coskun
Ahmet F. Coskun@ahmetfcoskun·
- Spatial Omics Seminar Series 5 - Jean Fan (Johns Hopkins University) @JEFworks "Statistical approaches and computational tools for analyzing spatially-resolved single-cell transcriptomics data" [ 6-11-2021 Friday, 2-pm EST] with @RongFan8 spatialomics.net
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Public Journal Club Computational Biology
Have you heard about spatial genomics?🌠👩‍🔬🧑‍🔬 Are you interested in cancer?🦀Do you like stats? 📈In our next PJC, we will discuss a great paper that combines these disciplines to understand cancer evolution!!!
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