QIIME 2

Happy Monday! Start your week w/ a new QIIME 2 release: @qiime2 2024.2. New parallel shotgun actions, an updated visualizer for summarizing feature tables (see `summarize-plus`), performance enhancements & minor fixes throughout & a lot more. Enjoy! forum.qiime2.org/t/qiime-2-2024…

We're discussing whether it's important to continue posting links to our release announcements on X/Twitter. Is X/Twitter the primary way that you learn about new #QIIME2 releases?

#QIIME2 2023.9 is now available! 🎊 Exciting updates include an alpha release of our shotgun #metagenomics distribution (🎉🎉🎉), fully integrated provenance replay within the framework, batched decontam analysis, and more! Thank you contributors!! 🙌 forum.qiime2.org/t/qiime-2-2023…

QIIME 2 2023.7 is now available and includes a new 'split' method in q2-feature-table, support for OutputCollections in Galaxy, a whole new packaging distribution system, various minor bug fixes, and much more! Thanks to all who contributed! 🙌 forum.qiime2.org/t/qiime-2-2023…

@QIIME2 2023.5 is now available & includes new parallel computing support w @ParslProject, ability to resume failed pipeline runs, provenance replay, decontam actions, and much more. Thank you to all who contributed! #microbiome #bioinformatics forum.qiime2.org/t/qiime-2-2023…

We are very excited to make the @qiime2 toolkit for microbiome bioinformatics available on our cancer @galaxyproject server! This integration provides a graphical user interface for all QIIME2 tools plus connections b/t QIIME2 tools and the thousands of other tools in Galaxy

We're very excited to share that @qiime2 is now available on the public @galaxyproject server, cancer.usegalaxy.org, providing an easily accessible graphical interface for #microbiome #bioinformatics. More details at forum.qiime2.org/t/qiime-2-avai…

#QIIME 2 2023.2 is now live! Notable features include a diverging barplot visualizer for #ANCOM-BC results, a Proportional Engraftment of Donor Strains method and visualizer in q2-fmt, and misc bug fixes and improvements. Thanks to all contributors! forum.qiime2.org/t/qiime-2-2023…

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and preprocessing bias in classification of mock bacterial community samples #Metagenomic #MicrobimeData @PLOSONE dx.plos.org/10.1371/journa…

@QIIME2 2022.11 is live! Big new features inc artifact cache, improved diff abundance testing w ANCOM-BC, new usage examples, & more... Thanks to all contributors! Many exciting new #microbiome #bioinformatics features coming in 2023 - see you then! forum.qiime2.org/t/qiime-2-2022…

Great collab @salkinstitute @Scripps_Ocean @KnightLabNews @GenomesLab @HaererAndreas @oysteroasis @mcdonadt @zackskel @Frable UG Joe Vechinski, Mike Shane, Antonio Gonzalez, Dani Perry, and Eric Allen…from the deep sea to the surf zone !! New @qiime2 plug-in! Katharoseq

Today's the day. The 2022 ISB Virtual Microbiome Series (#isbmicro22) begins in 90 minutes. Day 1 of our course features @thaasophobia walking through analyzing amplicon sequencing data with Qiime 2. You still have time to register! Join us! @gibbological isbscience.org/microbiome2022/

q2-sapienns, a @qiime2 plugin for loading gene family, pathway, or taxonomy tables generated with #HUMAnN3 or #MetaPhlAn3 in #QIIME2 for downstream analysis, is now available #microbiome #bioinformatics forum.qiime2.org/t/q2-sapienns-…

The Caporaso Lab is hiring a Research Scientist. Come work on cutting edge #microbiome projects focused on #cancer, environmental #sustainability and more with the core @qiime2 development team! forum.qiime2.org/t/research-sci…

We have finished uploading our @galaxyproject tools to the Toolshed for QIIME 2 2022.8! More info can be found here: forum.qiime2.org/t/qiime-2-2022…