Artem Babaian

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Artem Babaian

Artem Babaian

@RNA_Life

Genetics; Computing; Viruses; RNA | The Laboratory for RNA-Based Lifeforms | Molecular Genetics / Donnelly Centre @ UofT 🇨🇦

Toronto Katılım Temmuz 2022
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Artem Babaian
Artem Babaian@RNA_Life·
This is the most consciousness-expanding project I've had the pleasure to contribute to: 🧬 We assembled all 27 million sequencing datasets / 44 petabases, and can search it in hours 🤯 🌎🧬 Next goal: SRA-scale BLAST search in sub 60 seconds
Rayan Chikhi@RayanChikhi

Today we’re excited to freely share an early-version of, perhaps, the world’s most expansive genetics dataset: Logan. #bioinformatics #petabase #genetics #genomics #openscience biorxiv.org/content/10.110…

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Artem Babaian
Artem Babaian@RNA_Life·
@jbsteinberg If Academia is your job, you're ganna have a bad time. If Academia is a continuation of your learning beyond the known, it's the best profession.
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Joseph Steinberg
Joseph Steinberg@jbsteinberg·
Tenured academia is really not "just a job." - can't be fired. - get a 5-month summer break. - complete flexibility on schedule/wfh - study what interests you -get paid more than enough to live comfortably. It's completely rational to work insanely hard to get this!
Prashant Garg@Prashant_Garg_

Lets relax

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Mikko Taipale
Mikko Taipale@mike_tilapia·
We are looking for a postdoctoral fellow to work on induced proximity and functional genomics! Join our team in Toronto 🇨🇦 to tackle major challenges in oncology and neurodegeneration. nature.com/naturecareers/…
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Jia-Bin Huang
Jia-Bin Huang@jbhuang0604·
What's your best advice for students/postdocs who want to go on to the academic job market in 1-2 years? (crowdsourcing this for a talk I’m giving next week!)
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Artem Babaian
Artem Babaian@RNA_Life·
@jbhuang0604 Trust your own instincts, and do what you think is the most important use of your time. Institutions serve scientists, not the other way around.
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University of Toronto
University of Toronto@UofT·
#UofT launches $24-million program to create 100 new postdoctoral positions, accelerate independent research ➡️ uoft.me/bZI
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Artem Babaian
Artem Babaian@RNA_Life·
MetaGraph: A Landmark paper in Petabase-scale Genomics is _finally_ out! 🚀🚀 Congrats Andre + Co. making the world's sequencing data🧬 available in a major achievement for the field. 🚀🚀
Andre Kahles (@[email protected])@akkah21

After years of research and continuous refinement, we’re thrilled to share that our paper on the MetaGraph framework — enabling Petabase-scale search across sequencing data — has been published today in Nature (nature.com/articles/s4158…).

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Andre Kahles (@akkah21@genomic.social)
Andre Kahles (@[email protected])@akkah21·
After years of research and continuous refinement, we’re thrilled to share that our paper on the MetaGraph framework — enabling Petabase-scale search across sequencing data — has been published today in Nature (nature.com/articles/s4158…).
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Donnelly Centre
Donnelly Centre@DonnellyCentre·
A warm welcome to Donnelly's newest Faculty member, Dr. Khalid Al-Zahrani! Our next news story will talk about his research and his journey; from elementary school trips to Canada Science and Technology Museum, to the first time he did bench work.
Donnelly Centre tweet mediaDonnelly Centre tweet mediaDonnelly Centre tweet media
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Donnelly Centre
Donnelly Centre@DonnellyCentre·
Have you ever wanted to peek behind the curtain of a hackathon? Our most recent article covers everything, from the creation of the winning projects to the private judging deliberations. Read it here: thedonnellycentre.utoronto.ca/news/anatomy-c…
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Rayan Chikhi
Rayan Chikhi@RayanChikhi·
One year after our initial preprint, we're excited to post a major update to Logan. At its heart, Logan is the assembly of 27 million samples (50 Pbp) using a 6-day cloud-compute peaking at 2.2M vCPUs. This compresses the SRA 140x compared to raw FASTQs. github.com/IndexThePlanet…
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Rayan Chikhi
Rayan Chikhi@RayanChikhi·
🌎👩‍🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵 Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open. doi.org/10.1101/2024.0…
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Nathan C. Frey
Nathan C. Frey@nc_frey·
After three exciting years @PrescientDesign @genentech, last Friday was my last day. It has been an amazing journey, with an incredible team, and I know there is much more to come from this stellar group of researchers. I am immensely grateful to my team, our collaborators, and to @stephenrra & @GligorijevicV for their mentorship and support over the years. Onto the next adventure!
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Artem Babaian
Artem Babaian@RNA_Life·
🤯 One of the coolest stories I've ever come across showcasing virus-host-superhost interactions. This is a major paradigm in virus pathology that is woefully under-explored. 🍄 #virology #microbiology #fungi
Neta Shlezinger@ShlezingerLab

🚨 Fungi + viruses + mammalian lungs? Buckle up! Our new paper in @natmicrobiol.nature.com uncovers the story of a deadly fungus and its gnarly viral hitchhiker — and how this duo may change how we diagnose & treat fungal disease 🍄🫁🚨 doi.org/10.1038/s41564… ⬇️

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Yuya Kiguchi, PhD
Yuya Kiguchi, PhD@YuyaKiguchi·
We are happy to announce that our latest manuscript has been published in Nature Communications! We identified the highly abundant and prevalent giant extrachromosomal element in the human mouth, named "Inocle". nature.com/articles/s4146…
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University of Toronto
University of Toronto@UofT·
#UofT and its hospital partners are celebrating the life and legacy of Professor Emeritus James Till, whose research demonstrated the existence of stem cells and fundamentally transformed the field of medical science. uoft.me/bDb
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Keşfet

@UofT @jbsteinberg @jbhuang0604 @uoft_intl @UTM @UTSC @workingatuoft @univcan