
Simon Mathis
241 posts

Simon Mathis
@SimMat20
PhD @Cambridge_Uni | AI in protein design & engineering | biotech & environmental applications | enzymes | geometric DL | prev. @ETH_physics





Next Tues (3/24) at 4PM ET, @DidiKieran and Danny Reisenbach will present "Proteina-Complexa: Scaling Atomistic Protein Binder Design with Generative Pretraining and Test-Time Compute" Papers: research.nvidia.com/labs/genair/pr… Sign up on our website for zoom links!



Excited to release the fully open-source code for gRNAde - our wet-lab validated, generative AI framework for 3D RNA inverse design 🚀⭐️ I pride myself on open-science & this is probably the most intense release I've done!




We've had a whopping 500+ sign-ups for our @NeurIPSConf mixer tomorrow, heavily waitlisted now! 🤩 Traveling to San Diego now and can't wait for the workshops and our mixer, electric AI fo Bio scene right now! Lots of the @Latent_Labs team are on-site already, let me know if you'd like to meet for a chat!



Introducing gRNAde: our own little "AlphaGo Moment" for RNA design! 🧬🚀 📝: tinyurl.com/gRNAde-paper Unlike proteins, RNA design has long relied on "wisdom of the crowd" (human experts) or the slow crawl of directed evolution — gRNAde changes that! 🧵👇

I like the way @joeybos lays out his vision for PhD supervision! Seems intense and rewarding.

Phosphorylation on tyrosines control key pathways in immunity, cancer, and metabolism. For the first time, we can now design proteins that specifically recognize individual phosphotyrosines, even in disordered regions. (1/8) Preprint: biorxiv.org/content/10.110…



🧬La-Proteina🧬 The first generative model demonstrating accurate co-design of fully atomistic protein structures (sequence + side-chains + backbone) at scale, up to 800 residues, with state-of-the-art atomistic motif scaffolding performance - has just made its code open-source! Learn more 🧵



