Simon Adar

@Magda_Skipper @CodeOceanHQ @NaturePortfolio This expansion and integrated automation is going to streamline the experience for authors, readers, editors and reviewers. Huge milestone!

And here's another reason for being excited - we are extending our partnership with @CodeOceanHQ to enable streamlined process for authors, editors & reviewers to easily share & review code on even more journals in @NaturePortfolio; we hope to extend it even further in the future

@navsh @CodeOceanHQ Thanks Naveh!

Massive respect to @SimonAdar & The team at @CodeOceanHQ for this important step. It is a strong validation of the quality of the team & product, but also of the importance of reproducibility and traceability of science! #OpenScience calcalistech.com/ctechnews/arti…

@sharoz Thanks Steve! We'll put this on our product roadmap.

@SimonAdar 2) Let people deep link into a specific file. Like [mycontainer]/results/result1.png. Then an external site or even the paper would take care of the navigation.

I'm both very impressed and disappointed after trying out @CodeOceanHQ It's a great way to upload your code and data to have a computationally reproducible container. And the UI for adding dependencies is great!

@sharoz Also, sometimes researchers publish multiple notebooks - should we place them one after the other?

But there's no way to set up any sort of landing page. For my case (and I'm sure many others), the HTML output of the RMarkdown compilation is what people should see first. Instead, a viewer just sees a maze of tabs and files. There's not even a way to deliver instructions.

@choldgraf @TimKietzmann @CodeOceanHQ Maybe Dryad or Zenodo? Do you want it for one page only or all the pages in a single Jupyter Book?

@TimKietzmann @CodeOceanHQ Eg i would strongly prefer something non proprietary

Scholarly Twitter - anybody know if it is easy to create a doi for a single page of something? Trying to figure out if somebody could create a citation for a page of a jupyter book

Great webinar discussion today. If you missed it, the recording is now available! #multiomics #genomics #bioninformatics #computationalbiology @SimonAdar @bhaibeka @michaelhoffman hubs.ly/H0QWTKQ0

@michaelhoffman @CodeOceanHQ @bhaibeka Absolutely! And should be available by the end of today. We'll send the link as soon as it is.

@CodeOceanHQ @bhaibeka @SimonAdar Was this recorded?

Last chance to register! Join us tomorrow, June 23rd at 11 am to learn how to improve the speed, efficiency, and results of cancer genomics research. Looking forward to a great discussion with @bhaibeka & @SimonAdar. hubs.ly/H0PKrxF0 #bioinformatics #computationalbiology

16/Data and code sharing artefacts now available! @CodeOceanHQ capsule that includes data and code for analysis and generation of results and figures. codeocean.com/capsule/717614…

#CancerGenomics research is experiencing exponential growth of #multiomics data. The problem? It still results in low discovery ROI. Join our webinar with industry experts @bhaibeka & @SimonAdar to learn how to streamline #geneanalysis. #compbio hubs.ly/H0P7nsN0

@MarkHahnel @CodeOceanHQ Thanks @MarkHahnel! 🙂

Congratulations to the @CodeOceanHQ gang! "With $21M in funding, Code Ocean aims to help researchers replicate data-heavy science": techcrunch.com/2021/05/17/wit…

Building a high throughput collaborative compbio team? Hear lessons learned from the past two decades by Yair Benita. His personal journey from GMH through @Merck and now @Cytoreason. Join us on May 13th. info.codeocean.com/webinar-boosti… #Bioinformatics

@benmarwick @CDWren @eLife @stencila @aap_saaorg @CodeOceanHQ @plotlygraphs Feel free to try it out @CDWren 😊

@benmarwick @CDWren @eLife @stencila @aap_saaorg @CodeOceanHQ @benmarwick, I believe you were the first one to publish a full reproducible article in @CodeOceanHQ as well! Here is an example of using @plotlygraphs. This can be embedded in any website including the article (by the publisher). codeocean.com/capsule/151696…

Anyone know of a journal that will allow for #plotly interactive plots within an article?

All data, code (in R) and results are accessible, reproducible and exportable in @CodeOceanHQ. codeocean.com/capsule/890716…

On this month's @ScienceMagazine cover: "Hispanic and Black officers make far fewer stops and arrests and use force less than white officers, especially against Black civilians". twitter.com/ScienceMagazin… #BlackLivesMatter, #Science

@lteytelman @protocolsIO She should add it as a pet in Adopt Me - Roblox. 🐶

My daughter made the @protocolsIO mascot and wants to know if any open science advocates and protocols.io champions would like one.

It's official! "No Evidence for Voter Fraud in the 2020 US elections". Full statistical analysis in R, compute Capsule is fully reproducible on @CodeOceanHQ and exportable. Code, data, Docker and results. ❤️ science @justingrimmer, @aeggers, @Rbloggers twitter.com/justingrimmer/…

Together, Code Ocean and Lumin offers a complete computational analysis solution for data-driven drug discovery with one research experience from data to discovery. #BioInformatics #Biotechnology @CodeOceanHQ #ChampionsOncology @ChampionsOncol1

We’re excited to partner with Champions Oncology to bring computational research-ready solutions directly to Lumin Bioinformatics customers! #BioInformatics #Biotechnology @CodeOcean #ChampionsOncology @ChampionsOncol1 twitter.com/ChampionsOncol…