Snitkin Lab

54 posts

Snitkin Lab

@SnitkinLabWGS

We apply genomics to understand the epidemiology and evolution of resistant pathogens.

Ann Arbor, MI Katılım Eylül 2017

70 Takip Edilen240 Takipçiler

Snitkin Lab retweetledi

Dept of Microbiology & Immunology @ the Univ of MI@UMMicroImmuno·12 Tem

Strain Variation in Clostridioides difficile Cytotoxicity journals.asm.org/doi/10.1128/ms… @SnitkinLabWGS Hanna/Snitkin Identified genomic variants most correlated w/changes in phenotypes & disease severity. Overlapping loci may be important for bacterial function & human clinical disease

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Snitkin Lab retweetledi

Dept of Microbiology & Immunology @ the Univ of MI@UMMicroImmuno·12 Tem

Ferric Citrate journals.asm.org/doi/10.1128/mb… @harry_mobley @SnitkinLabWGS Snitkin-Mobley: Ferric citrate uptake has not previously been associated w/UPEC isolates, underlining the importance of the continued study of these strains to fully understand their mechanisms of pathogenesis.

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Snitkin Lab@SnitkinLabWGS·29 Mar

We are excited to publish our framework for studying regional transmission using whole-genome sequencing data. Check out our corresponding open-source R package, regentrans 👇 snitkin-lab-umich.github.io/regentrans/ind…

Dept of Microbiology & Immunology @ the Univ of MI@UMMicroImmuno

regentrans ncbi.nlm.nih.gov/pmc/articles/P… @SnitkinLabWGS Snitkin Lab presents framework for studying regional pathogen transmission using whole-genome sequencing data, & corresponding open-source R package, regentrans,

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Snitkin Lab@SnitkinLabWGS·28 Şub

Congrats to @GenevieveChiara, @SnitkinLabWGS member & @umichsph MPH in Hospital & Molecular Epidemiology candidate, for her successful MPH capstone presentation: "Validation of strain profiling tool strainEST using Clostridium difficile population sequencing." Great work! 🥳🎉

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Snitkin Lab retweetledi

Dept of Microbiology & Immunology @ the Univ of MI@UMMicroImmuno·21 Şub

Phenotypic & ncbi.nlm.nih.gov/pmc/articles/P… @SnitkinLabWGS @ericmartens1 Snitkin/Martens results provide paths to expand phenotypic surveys of more diverse gut bacteria to understand their functions & also to leverage dietary fibers to alter the physiology of the gut microbial community

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Snitkin Lab@SnitkinLabWGS·3 Tem

Congrats to Dr. Stephanie Thiede! 🧫🦠 @stephstaph8 successfully defended her excellent dissertation, "Genomic Epidemiological Insights Into MRSA Transmission and Adaptation in an Urban Jail and the Surrounding Community" today. Congrats!🎉

Dept of Microbiology & Immunology @ the Univ of MI@UMMicroImmuno

First post COVID PhD defense with at least some in person. Congrats soon to be Dr Stephanie Thiede and her mentor Evan Snitkin!

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Snitkin Lab retweetledi

Dept of Microbiology & Immunology @ the Univ of MI@UMMicroImmuno·7 Haz

From the Snitkin Lab - work highlighting the prevalence of multiallelic sites and SNPs in overlapping genes within diverse bacterial genomes and the impact of reference allele choice on gene-based analyses. ncbi.nlm.nih.gov/pmc/articles/P…

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Snitkin Lab@SnitkinLabWGS·28 Eyl

Our latest preprint by @5hawnsolo with @mhayde2's group is out!

Shawn Hawken@DrShawnSolo

So excited our newest preprint from @SnitkinLabWGS & @mhayde2 is up! We used a SNV threshold free method to integrate #WGS and #Epi data to identify routes of #CRE transmission in an LTACH. #epitwitter #Genomics medrxiv.org/content/10.110…

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Snitkin Lab@SnitkinLabWGS·20 Nis

Excellent work by @saund_katie on the implementation of new bacterial #GWAS methods!!

Katie Saund@saund_katie

My third thesis paper with the @SnitkinLabWGS is out today! We originally began this project so that we could implement @MahaFarhat & @bjesseshapiro's phyC algorithm in R for one of our Cdif genomics projects. 1/4

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Snitkin Lab@SnitkinLabWGS·7 Nis

Are patients or hospitals a more important predictor for #antibioticresistance dissemination? Our latest work in @IDSAInfo teases them apart! Special thanks to @CDCgov for funding this research. #GoBlue #Genomics #epidemiology doi.org/10.1093/cid/ci…

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Snitkin Lab@SnitkinLabWGS·18 Mar

Congratulations @5hawnsolo! We have been so fortunate to be part of your amazing journey. Best of luck in all your future endeavours!! #GoBlue @UNC_Clin_Micro

Scott Hawken@ScottHawken

Congratulations Dr S Hawken PhD!!! ⁦@5hawnsolo⁩ ⁦@SnitkinLabWGS⁩

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Snitkin Lab@SnitkinLabWGS·17 Mar

It's happening! First graduate trainee @5hawnsolo from the Snitkin lab is defending her PhD work today at 2 PM (EDT)! All are welcome to see her hard work on combating infectious diseases in long-term care via bluejeans.com/557571257 @UMMicroImmuno (photo credit: @stephstaph8 )

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Snitkin Lab@SnitkinLabWGS·26 Kas

🎶🎅🎄❄️☃️It's beginning to look a lot like...sickness here in the Snitkin lab for the annual Bioinformatics Door Dec Contest. Elf on the shelf should have gotten his DTaP vaccine before he sat on that rusty nail...... @UMMicroImmuno #IDtwitter #SantaIsComingDownWithSomething

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Snitkin Lab@SnitkinLabWGS·16 Nis

Thanks to invitation by @UMichEEB, Evan takes us through cool work by @5hawnsolo, Zena Lapp, @alipirani88, and many amazing collaborators in understanding CRKP transmission! #AntibioticResistance #GenomicEpi

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Snitkin Lab@SnitkinLabWGS·7 Ara

Snitkin lab is participating in the holiday-themed door decoration contest hosted by the Bioinformatics department! Thanks to @stephstaph8 @5hawnsolo @saund_katie @RDCrawford26 @alipirani88 @bubblepig914 and @Sintsovka for #mandatoryfun!

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Snitkin Lab@SnitkinLabWGS·16 Kas

Watch it here!! m.youtube.com/watch?t=2788s&…

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Snitkin Lab@SnitkinLabWGS·11 Eki

Faculty corner: Chalk talks! @umichmedicine @umichgradschool

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Snitkin Lab retweetledi

Katie Saund@saund_katie·15 Kas

Fascinating paper by @anishpandey89 on #BacterialEvolution in upper respiratory tract. I made a #VisualAbstract as I was reading to keep the two studies straight. Paper: nature.com/articles/s4146… RT: twitter.com/Bacterioskepti…

David W. Cleary@Bacterioskeptic

New paper by @anishpandey89 in @NatureComms from the Read group at @UoS_Medicine and @SouthamptonBRC with me, @MaidenLab @XavierDidelot @NoMoreMrNEISGuy + others go.nature.com/2Q14Dfa "Microevolution of N. lactamica during controlled human infection"

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Snitkin Lab@SnitkinLabWGS·11 Eki

@umpda

QAM

Snitkin Lab@SnitkinLabWGS·24 Ağu

Goodbye lunch for Hannah - awarded a CDC/CSTE Applied Epidemiology Fellowship, and @genevievechiara - thank you for all your hard work this summer! Best of luck to you both and hope to see you soon! @CSTEnews

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Keşfet

@harry_mobley @GenevieveChiara @umichsph @ericmartens1 @mhayde2 @saund_katie @IDSAInfo @CDCgov