Thomas Derrien

👀🧠⚡️(please RT) Gold Lab is hiring! Exciting #postdoc #opportunity in #RNA #therapeutics. Please share with any interested candidates. Apply today! Full details here: gold-lab.org/we-are-hiring

👑🎯👇(please RT) Dear all, my fun and motivated team are seeking the next 'Goldie' #Postdoc to lead an exciting @hrbireland project to develop the next generation of #RNA #therapeutics! @UCD_Conway @RNASociety @Non_Coding_RNA @jrRNAscientists @NCCR_RNADisease @RNA_iit

Thank you to the 75 attendees and the 13 speakers. See you next year for a new edition of the MIGGS symposium!

Preprint on "BWT construction and search at the terabase scale". We can compress 100 human genomes to 11GB in 21 hours, find SMEMs with it, do affine-gap alignment and retrieve similar local haplotypes. 7.3Tb commonly sequenced bacterial genomes ⇒ 30GB arxiv.org/abs/2409.00613

@INRAE_MaIAGE @jobim2024 @MIGGS_workshop @ThomasDerrien7 @CamilleMrcht Website: miggs.mathnum.inrae.fr To submit a presentation : easychair.org/conferences/?c…

On parle de nous :) merci le GDR BIMMM ! @gdrbimmm

@GUILLAUMEGAUTRE is waiting for you at poster 256 at @jobim2024 (Wednesday, June 26, from 11:30 to 12:30 a.m.) to talk about « A workshop on Methods for Interfacing with Graphs of Genomic Sequences ». @MIGGS_workshop @ThomasDerrien7 @CamilleMrcht #JOBIM2024

📢 Call for participation "LifeScience PhD Symposium" 📅Abstract submission deadline : 9th September 👉 organized by @IGDRennes PhD students @RennesUniv @CNRS_dr17 @CNRSbiologie @InsermGrdOuest ℹ️ igdr-phd-symp24.sciencesconf.org

I´m thrilled to see our #LRGASP paper published in @naturemethods today. This is the work of many to benchmark long-read methods for transcriptomics, and a must-read paper for those using lrRNA-seq. Special thnks to @FJPardoPalacios and @TheBrooksLab (1/6) rdcu.be/dJ9ev

Our review paper on "Genome assembly in the telomere-to-telomere era" published online in @NatureRevGenet. It amazes me how much assembly has progressed in the past four years – often ~100X improvement in contiguity and base accuracy and with haplotypes and hard regions resolved!

📢 #Prix #OneHealth 👏Benoit Hédan ingénieur de recherche @CNRS de l'équipe Génétique du chien @IGDRennes @RennesUniv @CNRS_dr17 @CNRSbiologie 🏅récompensé lors du congrès international de cancérologie vétérinaire ! avec Jérome Abadie @oniris_officiel ℹ️s.42l.fr/IGDRActuBH

📢 Poste | Technicien·ne biologiste 👉 L'équipe de recherche « Interactions Hôte-Microbiote » dirigée par François Legoux @Inserm @IGDRennes recrute ! 🤝 @RennesUniv @CNRS_dr17 @CNRSbiologie @InsermGrdOuest ℹ️igdr.univ-rennes.fr/poste-de-techn…

Identification of transposable element families from pangenome polymorphisms biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

We are organizing an INSERM workshop entitled "Massive Genomic Data: Statistical and Bioinformatic advances" from September 16th to 18th 2024 in Bordeaux: ateliersinserm.dakini-pco.com/en/home-66-41.… Please spread the word !

So excited to see my first paper published in @naturemethods !! After years of work, #SQANTI3manuscript is finally out. Let me share with you some key features of this tool and how to use it for long-read #transcriptomics. 1/24🧵🪡👇 doi.org/10.1038/s41592…

Les résultats de la sélection pour les auditions #CRCN et #DR2 du #concoursCNRS 2024 sont disponibles ici pour la #section21. c3n-cn.fr/2024/03/06/con…

⚡️Pleased to share our latest article reviewing the exciting potential of manipulating or even engineering long noncoding RNAs #lncRNAs to create effective, durable, economical and safe therapies for #cancer : nature.com/articles/s4157… with @CoanMichela @ispiyou @HAYA_lncRNA

Preprint on Exploring gene content with pangenome gene graphs: arxiv.org/abs/2402.16185. It describes pangene for building gene graphs and for calling gene-level variations which can be found at pangene.bioinweb.org. Pleasant collaboration with @maxgmarin and @MahaFarhat.

I'm really outraged by the French govt's decision to cut almost €1 billion from the research and higher education budget. We're already far behind Germany, Austria, Belg., USA, etc. (2.22 vs 3.14, 3.26, 3.43, 3.46, etc. Wd Bk data) in terms of % of GDP devoted to research & dvpt