Virus Evolution

Out now in @Virus_Evolution: Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. academic.oup.com/ve/article/4/1…

Evidence of gene exchange among influenza viruses in Africa since 2009. Spatial distribution of A) H1N1pdm09 & B) H3N2 reassortants. My PhD paper alert!👉 doi.org/10.1093/ve/vea… Thanks @sdwfrost @Dr_Kitayimbwa @dpkats @MUIIPlus @UVRIug @Makerere @GeraldGmboowa @Virus_Evolution

Excited to share our work @Virus_Evolution: @TsuWangSun and I dissected gene-sharing patterns in #GiantVirus and showed their relationships with host associations. Big thanks to @the_fischer_lab and reviewers for comments. academic.oup.com/ve/article/7/2…

The history of foot-and-mouth disease virus serotype C: the first known extinct serotype? doi.org/10.1093/ve/vea… @Virus_Evolution #FMD #FMDV @WRLFMD

Our paper on SARS-CoV-2 recombination was just accepted at @Virus_Evolution! Very appreciative of the advice and support my advisors @KoelleLab and @AniceLowen provided. This project has developed into a much more robust analysis with your help academic.oup.com/ve/advance-art…

Our rodent hepacivirus paper has now been published in @Virus_Evolution! Congrats to everyone involved and many thanks for this collaborative work! #267040206" target="_blank" rel="nofollow noopener">academic.oup.com/ve/article/7/1…

Out (a while back) in @Virus_Evolution: Extensive genetic diversity and host range of rodent-borne coronaviruses. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Mapping the evolutionary landscape of Zika virus infection in immunocompromised mice. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Determinants of dengue virus dispersal in the Americas. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Exploring utility of genomic epidemiology to trace origins of highly pathogenic influenza A/H7N9 in Guangdong. academic.oup.com/ve/article/6/2…

Want to know more about the #stability of #sequences inserted into #viral genomes, but were too shy to ask? Check our review paper hot off the press @Virus_Evolution! @Mark_P_Zwart @niooknaw @NWO_Science @CNRS @MSCActions doi.org/10.1093/ve/vez…

Our paper describing within-host #SARSCoV2 diversity in #SouthAfrica hospital outbreaks is OUT in @Virus_Evolution! James E. San and co-authors show that viral mutations are transferred between patients and provide information about transmission chains. ➡️academic.oup.com/ve/advance-art…

Just published @Virus_Evolution ! San, Sinaye and Aquilah & colleagues. A truly African paper with South African, Ugandan & Kenyan as first authors - Transmission Dynamics of SARS-CoV-2 Within-Host Diversity in Two Major Hospital Outbreaks in South Africa academic.oup.com/ve/advance-art…

Out (a while back) in @Virus_Evolution: Multi-host dispersal of known and novel carnivore amdoparvoviruses. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Red fox viromes in urban and rural landscapes. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Longitudinal sampling is required to maximize detection of intrahost A/H3N2 virus variants. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Efficient inference, potential, and limitations of site-specific substitution models. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Genetic incompatibilities and reduced transmission in chickens may limit the evolution of reassortants between H9N2 and panzootic H5N8 clade 2.3.4.4 avian influenza virus showing high virulence for mammals. academic.oup.com/ve/article/6/2…

Out (a while back) in @Virus_Evolution: Genomic epidemiology of coxsackievirus A16 in mainland of China, 2000–18. academic.oup.com/ve/article/6/2…