WDL Dev Team

We're hosting a WDL hackathon focused on testing next week Feb 18-19 at the Broad Institute. Join us! Full details at support.terra.bio/hc/en-us/artic… and registration form at forms.gle/HuDVrd3smUaM49…

Very cool to see Cromwell on Azure 1.0.0 released on GitHub! github.com/microsoft/Crom…

Earlier this month, we released Cromwell on Azure, an open-source project on GitHub from Microsoft Genomics that provides scientific workflow management for genetic analysis. lnkd.in/eGdRHGz #MSFTAdvocate

@dbernick @fdmts java -Dconfig.file=google.conf -jar cromwell-47.jar run hello.wdl -i hello.inputs

@fdmts Gcloud Compute instance create

Let’s fight: When cabling up a rack of servers and storage, how is it done? Extra credit: Explain the superiority of your technique in the comments.

Featuring WDL and Cromwell on @Azure thanks to @Microsoft @Health_IT -- see also our blog at software.broadinstitute.org/wdl/blog?id=24…. Come chat about it at the @BroadGenomics booth 714 if you're at #ASHG19 this week!

Blue skies ahead for Cromwell on Azure! software.broadinstitute.org/wdl/blog?id=24…

Nice overview of bioinformatics workflows definition and execution including discussion of @commonwl @galaxyproject and @WDL_dev

Explore a WDL workflow on Dockstore by choosing between classic and EPAM visualizations. dockstore.org/workflows/gith…

So looking forward to having v1.0 support in @TerraBioApp ! It will unlock some really neat features with important effects like increased portability.

This blog post shows how to run WDL workflows on cloud on @TerraBioApp

Did you know our 1.6.0 release back in April lets you launch WDL workflows via @TerraBioApp now? Browse our workflows at dockstore.org/search?descrip… and try it out!

Would anyone in the Boston/Cambridge area be interested in an informal meetup about GATK? Chat about current tools, go over a few practical examples of how things work, comment on development roadmap (next features coming down the pipe) etc? If so, when/where?

Win a trip to @OBF_BOSC this summer in Basel!

We had a hackathon yesterday to make the AWS support in Cromwell. A lot of great progress was made, the next release should be exciting for the AWS users :)

Are you a Python developer with experience with @WDL_dev and @commonwl ? If so, get in touch with us, we're looking for you! truwl.com/xD_software_en…

It appears Cromwell has reached "bar graffiti" status. Onwards and upwards, Jamie!

GitHub sandbox project for creating and running @WDL_dev pipelines in Cromwell: github.com/ecerami/wdl_sa…. Runs locally and via @googlecloud Genomics API. Actually got to do some real coding over the past few weeks...!

@lynnlangit Hey that looks like #openwdl

If you maintain @WDL_dev workflows, "miniwdl check" can speed up your code/test/debug loop by detecting mistakes and oversights through static code analysis. Covers task shell scripts as well as WDL wiring. Early days; give it a try and file issues: github.com/chanzuckerberg…

On my way home after a fabulous @gatk_dev workshop in Copenhagen. Looking forward to get started implementing #GATK4 in our clinical workflow back home. Also really impressed by #WDL, #Cromwell, and #FireCloud. Will definitely try running “FiveDollarGenome” on my own genome data.