DeepMI Lab

We just released the next FastSurfer (v2.5), now with the improved Corpus Callosum Segmentation, eTIV minor fixes, experimental keepgeom and neuroLIT and support for Blackwell GPUs and Mac installer. See github.com/Deep-MI/FastSu… and deep-mi.org/FastSurfer

Through the exciting PhD Network Bridge-AI funded by the EU MSCA we are happy to announce that the application is now open. You can apply to join our lab as a PhD candidate by selecting the DC1 Project bridge-ai-dn.eu/open-phd-posit…

Dear neuroimaging community: We would like to announce this year's #FastSurfer course in Bonn, Germany, from Sep. 17 - 19. Registration is now open deep-mi.org/events/worksho… Looking forward to seeing you there ...

We just released #FastSurfer Version 2.4.1 with some hot fixes: --allow_root working, T2 can be passed again (for hypothalamus) and long stream with different image geometries. github.com/Deep-MI/FastSu…

Happy to announce a new FastSurfer release v2.4 with an awesome longitudinal pipeline and more ways to manually edit (among other things) deep-mi.org/FastSurfer github.com/Deep-MI/FastSu… #FastSurfer

Check out our newly released #FastSurfer v2.3 now with hypothalamus sub-segmentation ( #HypVINN ), now running also on Mac and H100 GPUs. Release notes: github.com/Deep-MI/FastSu… , Dockerhub: hub.docker.com/r/deepmi/fasts… , Documentation: deep-mi.org/FastSurfer

@LiangMa_brain @LZollei @FreeSurferMRI hi, sure here: github.com/Deep-MI/VINNA4…

@LZollei @FreeSurferMRI @deepmilab is there an open-sourced code to make your infant brain segmentation. currently, I was annoyed by the infant cortical surface results.

One more day to check out our poster (753) this afternoon at #OHBM2023! @deepmilab @FreeSurferMRI

Happy to announce the 2024 #DeepMI #FastSurfer / #FreeSurfer course: join us Sept 26-27 in Bonn, Germany, for two exciting days on state-of-the-art methods in human structural neuroimaging. More info: deep-mi.org/fastsurfer-cou…

Ho ho ho, after weeks of validating: the Xmas release of #FastSurfer is out: Version 2.2. was released today! It fixes an issue with the eTIV among other improvements. Try it out and let us know what you think. github.com/Deep-MI/FastSu… hub.docker.com/repository/doc…

Interested in sub-segmenting the hypothalamus region? Take a look at our new paper in @ImagingNeurosci which will become a module in #FastSurfer next year. @DZNE_en @MGHMartinos doi.org/10.1162/imag_a…

@nastasiayendiki @DZNE_en It was great having you here and hear about the amazing work you are planning with the center! Stop by again anytime...

Danke schön Martin Reuter for hosting me on this lightning visit to @deepmilab @DZNE_en in Bonn! It was exciting to see the growth of #FastSurfer and to present the vision of our new BRAIN CONNECTS center 🧠⚡️🍻 Next stop: wherever this train is going to, a bit unclear atm... 😬

How can we measure head motion during MRI acquisition? Come see us at #OHBM2023 Sun 12:15-14:15 and Mon 13:00-15:00 @ClemensPollak will stand by our poster (#746) on Quantifying Head Motion in large Population Cohorts. Also see sciencedirect.com/science/articl… @DZNE_en @MGHMartinos

Happy to announce our newest #FastSurfer release now including #CerebNet for the sub-segmentation of the cerebellum. Enjoy github.com/Deep-MI/FastSu…

* Fully-flexible means that our method can be used for any q-space acquisition scheme and can predict the diffusion signal for any q-vector

Interested in diffusion MRI signal reconstruction? With our DISCUS method, @christianewertx will present the first fully-flexible* learning-based method for this task @ISMRM Toronto on Wednesday, June 7th, between 8:15 and 9:15 a.m., digital poster 3611 at computer 27 #ISMRM23

If you want to learn about head motion in MRI, check out our new paper: doi.org/10.1016/j.neur… where we present a robust registration for tracking and show associations of motion with age, BMI and session duration in the #RhinelandStudy . #MartinosPubs @DZNE_en @MGHMartinos

All NeuroImage and NeuroImage:Reports editors have resigned over the high publication fee, and are starting a new non-profit journal imaging-neuroscience.org This comes with great regret, and a huge amount of thought and discussion- please read announcement to get more details.

Very happy to finally release #FastSurfer 2.0 after thorough testing, now with native sub-mm support! Take it for a spin and let us know what you think. github.com/Deep-MI/FastSu…

We are proud to announce that our #FastSurfer fastsurfer.net neuro MRI methods are now funded for open-source development via the @ChanZuckerberg Initiative chanzuckerberg.com/eoss/proposals… @DZNE_en @DZNE_de @MGHMartinos

Congrats to Leonie and @kueglerd for their accepted @MICCAI_Society paper this year. We analyze show training your segmentation model with data at multiple imaging resolutions may bias segmentations and propose a solution to reduce this bias effect. arxiv.org/abs/2206.14919