Frederic Bastian
39 posts

Frederic Bastian
@fred_bstn
@Bgeedb @ISBSIB associate director, in @marc_rr's lab @DEE_UNIL. Comparative transcriptomics, data integration, curation, bio-ontologies
Katılım Haziran 2018
66 Takip Edilen72 Takipçiler
Frederic Bastian retweetledi

Congratulations to our @iscb #ISMB2022 Bio-Ontologies Best Paper winner @fred_bstn from @ISBSIB and Best Poster winner @michael_boulder from @CUBoulder !! 🎉🍾😀
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Frederic Bastian retweetledi

📣 @iscb #ISMB2022 we have a great Day 2 line-up! 🔥🔥🔥
iscb.org/ismb2022-progr…
11:45-12:05 CDT see @fred_bstn present “Creation and unification of development and life stage ontologies for animals” 🎉
Moderated by @sanyabt11 🙏
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Frederic Bastian retweetledi

Announcing our 2022 @ISBSIB course "Gene expression made useful easily: tools and database of Bgee".
½ day of lectures on processing, curating and integrating #rnaseq, #singlecell & other data
½ day of Bgee web tools
1 day of Bgee R tools
sib.swiss/training/cours…
#Bioinformatics

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Frederic Bastian retweetledi

Bgee 15.0, no longer beta! With a brand new web interface, clearer and more reactive @fred_bstn @JulienWollbrett
@essepf @seb_moretti @ANiknejad
@ISBSIB @DEE_UNIL
twitter.com/Bgeedb/status/…
Bgee database@Bgeedb
We are excited to announce the beta release of Bgee 15, with 52 animal species and integration of #scRNAseq! bgee.org/bgee15_0/ @ISBSIB @DEE_UNIL
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@aechchiki J'ai vu aussi passer un thread par des spécialistes qui disaient que les masques papiers pouvaient être réutilisés en les laissant sécher quelques jours, ça doit être pareil pour les tissus (le virus ne survit pas plusieurs jours à l'air). Et c'est pas 60 la temp de destruction ?
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@_julien_roux @SattvaInstitute Seems like a cool video projector actually!
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@SattvaInstitute Yes it was a lot of fun!
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Behind the scenes at the #SIBDays20: Family Yoga activity (yesterday evening), to relax after an intense day!

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@SilasKieser @jeremiebreda @PierreJFabre It seems very interesting to identify unknown cell types and their marker genes, do I understand correctly that it's a good application @jeremiebreda?
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@jeremiebreda
Is your tool published? This could interest you @PierreJFabre
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Interesting talk of @jeremiebreda at #SIBdays20 Inferring regulatory landscapes from single-cell gene expression data
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Damn, this is overly long. This paper represents just the "ground" work for @Bgeedb IMO 🤪. Now, if future allows, we can build on top of it and have fun. Add new datatypes (hello scRNA-Seq). New tools that we'd like to be useful for biological discoveries. See you soon I hope!
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And many many more... @antifreezeprot for the BgeeDB package. @aechchiki, will spend a summer on dev. stage ontology with you again :p @ljljolin, @TinaBegum27, @GiuliaZancolli, damn, all members and alumni of @marc_rr's lab, thank you, for all the good times and help and advices.
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With the publication of the preprint about @Bgeedb in @biorxiv_bioinfo, I'll allow myself to make a thread. It's gonna be long and out of control. But there'll be some stuff about the content of the paper, I promise! biorxiv.org/content/10.110…
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