Frederic Lemoine

Accounting for Defective Viral Genomes in viral consensus genome reconstruction, application to influenza virus biorxiv.org/content/10.648…

Accounting for Defective Viral Genomes in viral consensus genome reconstruction, application to influenza virus biorxiv.org/content/10.648… #biorxiv_bioinfo

PhyML now implements the Bayesian phylogenetic bootstrap! To test it: option "--bayesian_bootstrap" with the latest commits of PhyML: github.com/stephaneguindo… Example: `phyml -d nt -i align.phy -m GTR -b 100 --bayesian_bootstrap`

#TalentsCNRS 🥈 Sarah Cohen-Boulakia, professeure des universités Université Paris-Saclay au @LisnLab (CNRS/@UnivParisSaclay /@centralesupelec /@Inria), s’est vue remettre la médaille d’argent du @CNRS pour ses recherches en sciences des données et en bioinformatique.

🌟 Join the Institut Pasteur as Scientific Director! 🌍 We're seeking a visionary scientist to shape global health through innovation and excellence. Help us drive cutting-edge research. Feel free to share with qualified candidates in your network! 👉 research.pasteur.fr/en/job/institu…

This is now published in @MolBioEvol , Thanks to the reviewers who helped improve the manuscript! doi.org/10.1093/molbev…

Our new preprint: « The Bayesian Phylogenetic Bootstrap, Application to Short Trees and Branches » biorxiv.org/content/10.110… In this approach, bootstrap MSA sites are given continuous weights rather than being sampled with replacement.

Mission accomplie 👏 Nos coureurs ont brillamment terminé les #20kmdeParis 🏃‍♀️ Merci à eux et à tous les donateurs qui soutiennent le #Pasteurdon. Votre générosité fait la différence pour la recherche 🌟

Go #TeamPasteur 🏃‍♀️🏃‍♂️ 60 coureurs passionnés sont sur la ligne de départ des #20kmdeParis pour soutenir la recherche et le #Pasteurdon. 🎗️ Merci à nos athlètes et à tous ceux qui encouragent la générosité au profit de la science !

EPFL has several faculty positions open this year, including in life sciences (aka including neuroscience!) 🧠🧬🦠 Great starting conditions, base yearly funding, top students, and … I mean, it’s gorgeous- quality of life is A+… epfl.ch/about/working/…

Accounting for partner notification in epidemiological birth-death models medrxiv.org/content/10.110…

Looking for a PhD position in 2025? 🧑‍🎓 Interested in endometriosis research? 🩸 We are looking for a computational candidate for the Pasteur-Paris University PhD program to join a fantastic international collab between my lab, @afilimon and L. Doridot! Please RT!

We are recruiting! For an @ERC_Research-funded project, we are PhD student(s) and postdoc to work on small RNAs in vector mosquitoes. Please RT or forward to interested candidates. @radboudumc_weet radboudumc.nl/vacatures/1458… radboudumc.nl/en/vacancies/1…

Today we’re excited to freely share an early-version of, perhaps, the world’s most expansive genetics dataset: Logan. #bioinformatics #petabase #genetics #genomics #openscience biorxiv.org/content/10.110…

Our lab at @institutpasteur initiated the #Olympiome2024, a @metasub initiative to study changes in the urban microbiome during the #joParis2024! If you want to know more, here a thread about it. (1/X)

🚀 NAR Genomics & Bioinformatics now ranks #8 among bioinformatics journals with a 2023 impact factor of 4.0! We're opening 3 Deputy Editor positions. Join our team: academic.oup.com/nargab/pages/d… #Bioinformatics #AcademicJobs #nargab

"Much Ado About Nothing: Accelerating Maximum Likelihood Phylogenetic Inference via Early Stopping to evade (Over-)optimization". Faster tree inference in RAxML-NG biorxiv.org/content/10.110…

It uses 1) goalign github.com/evolbioinfo/go… to generate weights (goalign build weightboot) , 2) PhyML github.com/stephaneguindo… to infer trees (it supports continous site weights with option "--weights"), and 3) gotree github.com/evolbioinfo/go… to compute supports

If you want to give it a try, a Nextflow workflow is available here github.com/evolbioinfo/ba… Input: MSA Output: Phylogenetic tree with bayesian supports + a figure with distribution of branch lengths.