ISA Metadata Toolkit

2.4K posts

ISA Metadata Toolkit

@isatools

#OpenSource tools to collect, describe & publish life, environmental, biomedical experiments with community standards; part of @ELIXIREurope enabling #FAIRdata

University of Oxford, UK Katılım Mayıs 2010

290 Takip Edilen847 Takipçiler

ISA Metadata Toolkit@isatools·3 Haz

And check out our poster:@ELIXIREurope lands on MARS! With #ISAformats at its core! Details at ➡️ github.com/elixir-europe/… #interoperability #multiomics #omics #FAIRdata

ELIXIR Europe@ELIXIREurope

We’re in Thessaloniki 🇬🇷 preparing for the 2025 ELIXIR All Hands meeting! We look forward to seeing you all soon.🎉 👉 Don’t forget to check the programme and decide which workshops or mini-symposium you want to attend: elixir-events.eventscase.com/EN/ahm2025/Age… #ELIXIR25

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ISA Metadata Toolkit@isatools·7 Oca

Excellent community practice on use of ISA metadata schema to capture metadata about #omics experiments in a hierarchical manner, in which the different layers can be integrated and connected within one project! ISA is also an @ELIXIREurope @ElixirNodeUk resource for #FAIRdata ⬇️

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ISA Metadata Toolkit@isatools·19 Ara

It’s time for our team to disconnect for the winter break ❄️ We're back in early Jan. Until then responses may be delayed and all support is on a best effort basis as our staff travel to visit friends and family!! @OxfordeResearch @oxengsci

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ISA Metadata Toolkit@isatools·14 Kas

Great presentation by Bert Droesbeke @ELIXIRnodeBE on behalf of @ELIXIREurope #MARS brokering initiative 4 submitting #multiomics life sciences studies to multiple repositories - already used for many EBI databases and more are joining in ➡️ github.com/elixir-europe/… #RDAPlenary

FAIRlady@SusannaASansone

Bert Droesbeke @ELIXIRnodeBE on #MARS the #ISAJSON based #multiomics metadata carrier and brokering initiative part of @ElixirNodeUk and @ELIXIREurope ➡️ github.com/elixir-europe/… @isatools #RDAPlenary #metadatastandard

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ISA Metadata Toolkit@isatools·13 Kas

The @ELIXIREurope #MARS #ISAJSON poster presented by Sveinung at #RDAPlenary and will features on Thursday in the #multiomics WG session ➡️ github.com/elixir-europe/…

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ISA Metadata Toolkit@isatools·4 Kas

We are also present at the @ELIXIREurope #BioHackEU24 with the #MARS project “Multi-omics Adapter for Repository Submissions” a #DataBrokering initiative with #ISAJSON as #metadata carrier ⬇️ #EOSC #ELIXIR #interoperability #FAIRdata

ELIXIR Europe@ELIXIREurope

🎉 We’re in Barcelona getting ready for BioHackathon 2024! #BioHackEU24 ⚠️ Please follow the travel directives and stay safe. The project presentation will be in hybrid mode at 13:30 CET. Look forward to seeing you online and hacking on projects together 🧑‍💻 in the next few days.

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ISA Metadata Toolkit@isatools·30 Eki

Note the central presence and role of #ISA in this ⬇️ #RDA group, and at upcoming @resdatall plenary there will be a presentation of the use of #ISAJSON in the @ELIXIREurope project for a common #multiomics #metadata carrier 😃

RDA Europe@RDA_Europe

👩‍💻👨‍💻Seeking developers! The Multi-Omics Metadata Standards Working Group needs a software and web developer to develop their Landscape Dashboard into an interactive, web-based tool. Interested? Learn more and apply: ow.ly/NFKb50TQstv @lnanderscience @FAIRsharing_org

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ISA Metadata Toolkit retweetledi

RDA Europe@RDA_Europe·22 Eki

📣Call for Experts The Multi-Omics Metadata Standards Working Group is seeking a software and web developer to develop their Landscape Dashboard into an interactive, web-based tool. Sounds like you? Learn more and apply: ow.ly/NFKb50TQstv @lnanderscience @FAIRsharing_org

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ISA Metadata Toolkit@isatools·1 Ağu

It's time for our team to disconnect, log out of Teams, Zoom, Slacks and emails and have a well deserved holiday break. Our usual and sincere big THANK-YOU to all our collaborators and friends! Back in September!

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·13 Haz

Highlighting @ralf_weber of @unibirmingham on #metabolomics & #multiomics data integration; and @Phil_at_OeRC of @OxfordeResearch on #MetadataManager tool & #FAIRdata with @isatools, testing #DataBrokering to EBI databases with #ISAJSON (github.com/elixir-europe/…) #PrecisionToxACM

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·11 Haz

Philippe Rocca-Serra on latest advances with @isatools and the planned #BioHackathon project using #ISAJSON for #multiomics data brokering #ELIXIR24

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·10 Haz

And Sebastian Beier #ELIXIR Germany Node flags the COPO system as another #ISAJSON compliant system - yeah it will be a great BioHackathon project and hopefully we will soon shelf #multiomics brokering challenge as “job done”! #ELIXIR24 @isatools

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·10 Haz

This #Biohackathon2024 “MARS multiomics brokering project” with @isatools and many #ISAJSON producing tools and platforms gets also highlighted by Flora D’Anna @ELIXIRnodeBE in the #ELIXIRDataPlatform session at #ELIXIR24

ISA Metadata Toolkit@isatools

Well done to all selected projectl!! Spotlight on the “Project 23: MARS: Multi-omics Adapter for Repository Submissions, preparing for launch” by Bert Droesbeke, Philippe Rocca-Serra @Phil_at_OeRC with #ISAJSON and more at github.com/elixir-europe/… #ELIXIR24

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ISA Metadata Toolkit@isatools·10 Haz

ELIXIR Europe@ELIXIREurope

📣 The BioHackathon Programme Committee has selected 32 projects out of 62 eligible submitted projects! Check the website for the selected projects 👉 biohackathon-europe.org/projects/ Found a project you’re interested in already? Registration will open in late June, stay tuned with us!

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·10 Haz

@ELIXIREurope Yeah! Well done to al selected projectl!! Spotlight on “Project 23: MARS: Multi-omics Adapter for Repository Submissions, preparing for launch” by Bert Droesbeke, Philippe Rocca-Serra @Phil_at_OeRC with @isatools and more at github.com/elixir-europe/…! #ELIXIR24

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·27 Şub

Our @Phil_at_OeRC is at #swat4ls to present tomorrow the @ELIXIREurope #FAIRcookbook from an industry prospective. Also great to see community work progresses around the widely adopted @isatools with mapping to #DCAT and #FHIR standard models 😜 #omics #interoperability #FAIRdata

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·6 Şub

Our @OxfordeResearch #DataReadiness funded under the @ELIXIREurope #Interoperability platform for activities encompassing @isatools @FAIRsharing_org and the #FAIRcookbook to enable #FAIRdata ⬇️

ELIXIR Europe@ELIXIREurope

🙌 ELIXIR has launched 8 projects (Commissioned Services) addressing the scientific and technological ambitions 🔬 of its new Scientific Programme for 2024 to 2028 and connecting experts in ELIXIR Nodes 🌍. Read the news 👉 elixir-europe.org/news/new-proje…

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·22 Oca

Great example published @GigaScience on the use of @isatools and #ROcrate to achieve #FAIRdata ➡️ doi.org/10.1093/gigasc… #omics #reproducibility #opendata - @ELIXIREurope @ElixirNodeUk

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ISA Metadata Toolkit@isatools·20 Ara

It's time for our team to have a well deserved winter ❄️break. We couldn't leave though without first giving a usual big THANK-YOU to all our users, collaborators and friends, and we will see you in the new year!!!

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ISA Metadata Toolkit retweetledi

FAIRlady@SusannaASansone·3 Kas

Thank to @Phil_at_OeRC for contributing to @isatools and related #metadata #FAIRdata related activities at the @ELIXIREurope #BioHackEU23 !! ⬇️

ELIXIR Europe@ELIXIREurope

🎉Thank you all for joining #BioHackEU23! A special thanks to our online and overseas participants 🙌 staying up late hacking through different projects with us. 👏It has been a great week!! And we look forward to seeing you next year for #BioHackEU24!🥳

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Keşfet

@ELIXIREurope @ElixirNodeUk @OxfordeResearch @oxengsci @ELIXIRnodeBE @resdatall @lnanderscience @FAIRsharing_org