jeromemutterer
2.8K posts

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Won best thesis award with this video! 4 years of research and play in 3 minutes :')
youtu.be/so0fPlK1-LM

YouTube
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The UConn Advanced Light Microscopy Facility will be holding a one-day workshop, "Image Analysis with ImageJ" on Wednesday, January 14th. Attendees will learn practical workflows and practice on real datasets. Info and registration at confocal.uconn.edu/analysisworksh…

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Now in iScience
cell.com/iscience/fullt…
Such an amazing journey with @mariezilliox and Gaelle Letort and all the coworkers.
Chemokine and morphogenesis
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Heureux de présenter l'EnderScope à Strasbourg au 72e Congrès National des Professeurs de Physique et de Chimie, "Sciences aux Frontières" @Niamh_deBurca @RTMFM1 @GDR_ImaBio @Fr_BioImaging @EuroBioImaging @cnrs_ibmp @igbmc

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#HappyMicroscopyMonday!
#microscopycommunity -Imaging Scientists in Core Facilities play a vital role in advancing research. How are their contributions recognized in publications?
Take the survey now: buff.ly/KrgAXwN

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"From cells to pixels: A decision tree for designing bioimage analysis pipelines" by Elnaz Fazeli, Robert Haase, Michael Doube, Kota Miura & David Legland is free-to-view here: doi.org/10.1111/jmi.70…
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📢 We’re hiring at the EMBL Imaging Centre!
Join our growing team in:
🔬 Cryo-EM
💡 Light Microscopy
📋 Lab Management
Apply here 👉rb.gy/hb8gab
⏳ Deadline: 6 Oct 2026
💻 Interviews: Oct (online) + Nov (onsite)
#Hiring #Microscopy #CryoEM #LightMicroscopy #ScienceJobs

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Ensuring reproducibility in GUI-based bio-image analysis tools can be tricky. In her blogpost, @maralampert highlights features in Napari, Fiji, QuPath, Galaxy, CellProfiler and JIPipe that support workflow saving and sharing.
focalplane.biologists.com/2025/08/05/fro…

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#RxivMaker updated to v1.1.0: now supports R auto-generated figures and lots of bug fixes
Details in: github.com/HenriquesLab/r…


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🔬👨💻📰 #SReD is out!
Automated structural detection for #ImageJ & #FIJI, from nano to macro ✨🐘. No training data, no bias - texture analysis with GPU acceleration!⚡️ Brainchild of @afonsomendes92 and adventure w @christlet lab + friends.
Check: nature.com/articles/s4146…


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Used QuPath before and hit a challenge?👇
Our Call for Help is open! If you joined our May course (or know the basics), send us your image + analysis problem.
Basic QuPath knowledge required
Scan the QR code in the post to submit!!
#PPBI #QuPath #ImageAnalysis #Microscopy

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Et c'est une première phase de collaboration qui s'achève entre la faculté des sciences de @UB_Rumuri et les chercheurs de @GDR_ImaBio !
Bel exemple de coopération scientifique entre la 🇫🇷 et le 🇧🇮
@franceauburundi
Erwan Grandgirard@egrandgirard1
Fin de mission Microscopie Solidaire Burundi. Encore merci pour leur soutien: @CNRS @Inserm @GDR_ImaBio @CIRI_Lyon @Phlam_Labo @cnrs_ibmp @CbiToulouse @IGBMC , pour leur aide sur place et leur accueil @UB_Rumuri @franceauburundi @CampusBurundi. Échanges et rencontres formidables
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Fin de mission Microscopie Solidaire Burundi. Encore merci pour leur soutien: @CNRS @Inserm @GDR_ImaBio @CIRI_Lyon @Phlam_Labo @cnrs_ibmp @CbiToulouse @IGBMC , pour leur aide sur place et leur accueil @UB_Rumuri @franceauburundi @CampusBurundi. Échanges et rencontres formidables




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📷//RETOUR EN IMAGES SUR… La conférence #FranceAlumniDay « Les Alumni nous orientent en … sciences de l’environnement » 🌱




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Train the Trainers in Bioimage Analysis 2025 - RMS DAIM - Crick Partnership
1-day workshop to establish and disseminate guidelines on how to organise courses and train researchers in bioimage analysis
franciscrickinstitute.github.io/Train_the_trai…
Deadline: 6th May 2025
@TheCrick @RoyalMicroSoc

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I tricked ChatGPT into helping me create an #ImageJ macro language extension to create/process data in the XML format. It's available here for anyone to use: github.com/mutterer/XMLMa…




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[Event] Join the NEUBIAS BioImage Analysis Course!🖥️
2 parallel tracks:
➡️Early career investigators – Master bioimage analysis tools
➡️Analysts – Master & deploy advanced tools, HPC
📅 May 12-16
📍 Institut Pasteur, Paris
🔗 Apply by March 31👉bit.ly/3DxvEBV

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This summer, we are running a one-week intensive workshop on Python-based BioImage Analysis.
Are there better ways to spend 6 days in mid-July in Boston? Probably.
Would you learn as much as you will here? Probably not.
Apply here:
iac.hms.harvard.edu/bobiac/2025
HMS Image Analysis Collaboratory@HMS_IAC
Announcing the Boston Bioimage Analysis Course — BoBiAC! Join us this July at @harvardmed in Boston for a 6-day deep dive into bioimage analysis with Python, hosted by @HMS_IAC and @cite_at_hms. Apply by May 16th 2025!
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