Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
Jérôme Arnoux @jpjarnoux.bsky.social
187 posts
Jérôme Arnoux @jpjarnoux.bsky.social
@jpjarnoux
PhD in Bioinformatics | Postdoc @IceLab_umea Using AI/ML to discover new antibiotics against resistant bacteria 🦠 #AMR #RNAseq #AI #MachineLearning
Umeå, Sweden Katılım Eylül 2018
106 Takip Edilen110 Takipçiler
Happy to announce that I've started my postdoctoral position at @IceLab_umea! 🎉 My project focuses on developing AI models (ML/DL) to predict protein levels from RNA-seq data in bacterial infections, to identify new therapeutic targets to combat #AMR🦠🤖 #AIforScience #Postdoc
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@erikgarrison Hi!
I recently completed my PhD in comparative pangenomics, focusing on interspecies genomic diversity and metabolism.
I'm now looking for a postdoc to continue research in pangenomic analysis & AI.
I am very interested in this opportunity. I'd love to discuss how to apply!
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Postdoc position opening in my group! Research projects: pangenomes for diverse organisms, genome evolution, biocomputing, language models. Please reach out if interested!
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
Happy to have presented 20 years of microbial genomics with MicroScope @jobim2024
@IFB_Bioinfo @Genopole @GenoUMR_GM @CEA_Jacob_
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
@GUILLAUMEGAUTRE and @j_main_guy are waiting for you at poster 108 at @jobim2024 (Tuesday, June 25, from 5:45 to 6:45 p.m.) to talk about « PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomes ».
@GenoLabgem @CEA_Jacob_ @GenoUMR_GM
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
@j_main_guy and @GUILLAUMEGAUTRE are ready to present PanGGOLiN v2 #JOBIM2024
@GenoUMR_GM @CEA_Jacob_
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
Proud to have presented my work on Integrating complex pangenome graphs at SEAGRAPH at ICDE 2024! It was a great opportunity to collaborate with experts in the field of graph databases !
@GenoLabgem @GenoUMR_GM
@CEA_Jacob_
#SEAGRAPH #ICDE2024 #pangenomic
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🌊 Exciting Update! 🌟
Thrilled to be at the SeaGraph workshop at ICDE 2024 conference in Utrecht today, presenting our work on "Integrating complex pangenome graphs"! 🚀📊
@sdumbrav @GUILLAUMEGAUTRE
@GenoLabgem @GenoUMR_GM @CEA_Jacob_
#SeaGraphWorkshop #ICDE2024 #pangenomic
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
👏Félicitations à l'équipe du @GenoLabgem pour ce prix #OpenScience du @sup_recherche pour le logiciel libre #PPanGGoLin dédié à l'analyse de pangénomes procaryotes pour étudier l'évolution ou l'écologie des microbes.
@UnivEvry @Genopole @CEAParisSaclay
Institut de Biologie François Jacob@CEA_Jacob_
[#prix #scienceouverte] Retour sur la 2e éd. des Prix Science ouverte logiciel libre du @sup_recherche qui a eu lieu en novembre dernier. Le logiciel #PPanGGOLin , développé par @GenoLabgem , a reçu le prix espoir catégorie "Scientifique & technique". 👉jacob.cea.fr/drf/ifrancoisj…
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
[#prix #scienceouverte] Retour sur la 2e éd. des Prix Science ouverte logiciel libre du @sup_recherche qui a eu lieu en novembre dernier.
Le logiciel #PPanGGOLin , développé par @GenoLabgem , a reçu le prix espoir catégorie "Scientifique & technique".
👉jacob.cea.fr/drf/ifrancoisj…
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
It also introduces methods to use PPanGGOLiN pangenome as "references" to annotate your genomes, to compare regions of genomic plasticity together to study within-species HGT, along with new output file formats to integrate better with other bioinformatics tools!
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
After a year of development, PPanGGOLiN 2.0.0 is now out in the wild !! github.com/labgem/PPanGGO…
Its major new features include a way to integrate any annotation from any tool in the graph, an improved data structure to store your pangenomes, and a brand new documentation !
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
Ben Langmead, will propose a talk about “Movi: a fast and cache-efficient full-text pangenome index”
Monday, January 8 at 4 p.m. CET, by videoconference at inria.webex.com/join/pierre.pe….
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
The PPanGGOLiN team #pangenome
@jpjarnoux @vallenet @axbazin @GUILLAUMEGAUTRE et Alexandra Calteau
@CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo @Genopole @fr_genomics
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
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Jérôme Arnoux @jpjarnoux.bsky.social retweetledi
PPanGGOLiN is nominated for the prize « Science ouverte du logiciel libre de la recherche »
@GUILLAUMEGAUTRE @axbazin @jpjarnoux @j_main_guy @vallenet et Alexandra Calteau
@CEA_Jacob_ @GenoUMR_GM @IFB_Bioinfo
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